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    LINC00671 long intergenic non-protein coding RNA 671 [ Homo sapiens (human) ]

    Gene ID: 388387, updated on 17-Jun-2024

    Summary

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    Official Symbol
    LINC00671provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 671provided by HGNC
    Primary source
    HGNC:HGNC:44339
    See related
    Ensembl:ENSG00000213373 AllianceGenome:HGNC:44339
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in kidney (RPKM 11.1), bone marrow (RPKM 3.7) and 2 other tissues See more
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    Genomic context

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    See LINC00671 in Genome Data Viewer
    Location:
    17q21.31
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (42874674..42898734, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (43731818..43755877, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (41026691..41050751, complement)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene amine oxidase copper containing 3 Neighboring gene amine oxidase copper containing 4, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:41029817-41030346 Neighboring gene HNF1 motif-containing MPRA enhancer 258 Neighboring gene RNA, U6 small nuclear 287, pseudogene Neighboring gene glucose-6-phosphatase catalytic subunit 1 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr17:41069082-41069840 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:41080466-41081042 Neighboring gene RNY4 pseudogene 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. STAT3/LINC00671 axis regulates papillary thyroid tumor growth and metastasis via LDHA-mediated glycolysis. Huo N, et al. Cell Death Dis, 2021 Aug 17. PMID 34404767, Free PMC Article
    2. A proteome-scale map of the human interactome network. Rolland T, et al. Cell, 2014 Nov 20. PMID 25416956, Free PMC Article
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. STAT3/LINC00671 axis regulates papillary thyroid tumor growth and metastasis via LDHA-mediated glycolysis.
      Title: STAT3/LINC00671 axis regulates papillary thyroid tumor growth and metastasis via LDHA-mediated glycolysis.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Clone Names

    • FLJ31222, MGC148166, AC100793.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027254.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016889, AK055784, BC122868, DC361857
      Related
      ENST00000301683.7

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      42874674..42898734 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      43731818..43755877 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_207388.1: Suppressed sequence

      Description
      NM_207388.1: This RefSeq was permanently suppressed because there is no support for the protein and it is a nonsense-mediated mRNA decay (NMD candidate.
    Nucleotide Protein
    Heading Accession and Version

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