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    CCDC160 coiled-coil domain containing 160 [ Gallus gallus (chicken) ]

    Gene ID: 428240, updated on 5-Mar-2024

    Summary

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    Symbol
    CCDC160provided by CGNC
    Full Name
    coiled-coil domain containing 160provided by CGNC
    Primary source
    CGNC:53301
    See related
    Ensembl:ENSGALG00010025953
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    POU2F3
    Orthologs
    human mouse all
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    Genomic context

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    See CCDC160 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 24 NC_052555.1 (3849616..3886070, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 24 NC_052596.1 (3809060..3845504, complement)

    Chromosome 24 - NC_052555.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 136 family member 1 Neighboring gene transmembrane protein 136 Neighboring gene out at first homolog Neighboring gene uncharacterized LOC112530262 Neighboring gene tripartite motif containing 29

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation and mapping of two chicken POU family genes and the identification of a syntenic group with human and mouse. Heltemes LM, et al. Anim Genet, 1997 Oct. PMID 9363595

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    POU domain, class 2, transcription factor 3
    Names
    POU class 2 homeobox 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052555.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      3849616..3886070 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040652162.2 → XP_040508096.1  POU domain, class 2, transcription factor 3 isoform X3

      UniProtKB/TrEMBL
      F1P1W9
      Related
      ENSGALP00010039061.1, ENSGALT00010063276.1
      Conserved Domains (2) summary
      smart00352
      Location:237 → 311
      POU; Found in Pit-Oct-Unc transcription factors
      smart00389
      Location:335 → 391
      HOX; Homeodomain

    2. XM_015298186.4 → XP_015153672.1  POU domain, class 2, transcription factor 3 isoform X2

      UniProtKB/TrEMBL
      F1P1W9
      Conserved Domains (2) summary
      smart00352
      Location:255 → 329
      POU; Found in Pit-Oct-Unc transcription factors
      pfam00046
      Location:356 → 410
      Homeobox; Homeobox domain

    3. XM_015298185.4 → XP_015153671.1  POU domain, class 2, transcription factor 3 isoform X1

      UniProtKB/TrEMBL
      F1P1W9
      Related
      ENSGALP00010039063.1, ENSGALT00010063280.1
      Conserved Domains (2) summary
      smart00352
      Location:255 → 329
      POU; Found in Pit-Oct-Unc transcription factors
      pfam00046
      Location:356 → 410
      Homeobox; Homeobox domain

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052596.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      3809060..3845504 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040690191.2 → XP_040546125.1  POU domain, class 2, transcription factor 3 isoform X3

      UniProtKB/TrEMBL
      F1P1W9
      Conserved Domains (2) summary
      smart00352
      Location:237 → 311
      POU; Found in Pit-Oct-Unc transcription factors
      smart00389
      Location:335 → 391
      HOX; Homeodomain

    2. XM_040690190.2 → XP_040546124.1  POU domain, class 2, transcription factor 3 isoform X2

      UniProtKB/TrEMBL
      F1P1W9
      Conserved Domains (2) summary
      smart00352
      Location:255 → 329
      POU; Found in Pit-Oct-Unc transcription factors
      pfam00046
      Location:356 → 410
      Homeobox; Homeobox domain

    3. XM_040690189.2 → XP_040546123.1  POU domain, class 2, transcription factor 3 isoform X1

      UniProtKB/TrEMBL
      F1P1W9
      Conserved Domains (2) summary
      smart00352
      Location:255 → 329
      POU; Found in Pit-Oct-Unc transcription factors
      pfam00046
      Location:356 → 410
      Homeobox; Homeobox domain
    Nucleotide Protein Strain
    Heading Accession and Version

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