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    LINGO1-AS2 LINGO1 antisense RNA 2 [ Homo sapiens (human) ]

    Gene ID: 101929478, updated on 10-Oct-2023

    Summary

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    Official Symbol
    LINGO1-AS2provided by HGNC
    Official Full Name
    LINGO1 antisense RNA 2provided by HGNC
    Primary source
    HGNC:HGNC:51423
    See related
    Ensembl:ENSG00000259281 AllianceGenome:HGNC:51423
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 3.5) See more
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    Genomic context

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    See LINGO1-AS2 in Genome Data Viewer
    Location:
    15q24.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (77660051..77668074)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (75520378..75528412)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (77952393..77960416)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370906 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77863406-77863906 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77863907-77864407 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77866115-77866615 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77874268-77874768 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77876983-77877794 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77892119-77892619 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:77893796-77893952 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77897574-77898293 Neighboring gene Sharpr-MPRA regulatory region 5143 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77903637-77904464 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77906671-77907170 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:77908397-77909223 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:77913981-77914496 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:77914497-77915012 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:77916045-77916560 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77922113-77922678 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr15:77926073-77926636 Neighboring gene leucine rich repeat and Ig domain containing 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77937918-77938418 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77942484-77942984 Neighboring gene LINGO1 antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:77952267-77953188 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77959162-77959662 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77959663-77960163 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77963681-77964597 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:77969616-77970141 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:78004126-78004664 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:78005958-78006458 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:78029912-78030425 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:78031965-78032478 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:78031453-78031964 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:78032479-78032990 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:78033504-78034015 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:78039893-78040461 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:78040462-78041029 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:78041067-78041828 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:78044539-78044736 Neighboring gene MPRA-validated peak2394 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:78076600-78077183 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:78077259-78077760 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:78090197-78090896 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:78092471-78092970 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:78096516-78097110 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:78100953-78101820 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:78103235-78103736 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:78110270-78110904 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:78110905-78111539 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9899 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:78156801-78157306 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:78157307-78157812 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:78161208-78161708 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:78163573-78164411 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:78171267-78171767 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:78180036-78180778 Neighboring gene chondroitin sulfate proteoglycan 4 pseudogene 13 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:78196402-78196966 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:78196967-78197531 Neighboring gene dynamin 1 pseudogene 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_120361.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC110607, BC038758, BI463387
      Related
      ENST00000557799.1

    2. NR_120362.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site at the 5' terminal exon, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      BC038758, BI463387, HY007517

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      77660051..77668074
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      75520378..75528412
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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