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    LINC02882 long intergenic non-protein coding RNA 2882 [ Homo sapiens (human) ]

    Gene ID: 100507377, updated on 10-Oct-2023

    Summary

    Official Symbol
    LINC02882provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2882provided by HGNC
    Primary source
    HGNC:HGNC:54802
    See related
    Ensembl:ENSG00000251138 AllianceGenome:HGNC:54802
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC02882 in Genome Data Viewer
    Location:
    12q21.1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (74133173..74292631, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (74110473..74266491, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (74526953..74686411, complement)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene U8 small nucleolar RNA Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr12:74163268-74164467 Neighboring gene long intergenic non-protein coding RNA 2445 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:74371981-74372553 Neighboring gene long intergenic non-protein coding RNA 2394 Neighboring gene MPRA-validated peak1834 silencer Neighboring gene SURP and G-patch domain containing 1 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:74564879-74565379 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:74685765-74686413 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:74686414-74687061 Neighboring gene uncharacterized LOC107987178 Neighboring gene VENT homeobox pseudogene 3 Neighboring gene uncharacterized LOC124902967

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    Genome-wide association with bone mass and geometry in the Framingham Heart Study.
    EBI GWAS Catalog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038300.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      BC061638
      Related
      ENST00000549905.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      74133173..74292631 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      74110473..74266491 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)