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    Sowaha sosondowah ankyrin repeat domain family member A [ Mus musculus (house mouse) ]

    Gene ID: 237761, updated on 30-Apr-2024

    Summary

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    Official Symbol
    Sowahaprovided by MGI
    Official Full Name
    sosondowah ankyrin repeat domain family member Aprovided by MGI
    Primary source
    MGI:MGI:2687280
    See related
    Ensembl:ENSMUSG00000044352 AllianceGenome:MGI:2687280
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ankrd43; A830006N08Rik
    Summary
    Is expressed in brain; liver lobe; and olfactory epithelium. Orthologous to human SOWAHA (sosondowah ankyrin repeat domain family member A). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human all
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    Genomic context

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    See Sowaha in Genome Data Viewer
    Location:
    11 B1.3; 11 31.95 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (53367405..53371022, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (53476578..53480195, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene predicted gene 10447 Neighboring gene shroom family member 1 Neighboring gene predicted gene 9945 Neighboring gene predicted gene, 19835 Neighboring gene ribosomal protein L9, pseudogene 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular specification and patterning of progenitor cells in the lateral and medial ganglionic eminences. Tucker ES, et al. J Neurosci, 2008 Sep 17. PMID 18799682, Free PMC Article
    2. Regulation of otocyst patterning by Tbx2 and Tbx3 is required for inner ear morphogenesis in the mouse. Kaiser M, et al. Development, 2021 Apr 15. PMID 33795231
    3. Gene expression analysis of the late embryonic mouse cerebral cortex using DNA microarray: identification of several region- and layer-specific genes. Funatsu N, et al. Cereb Cortex, 2004 Sep. PMID 15142957
    4. A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain. Thompson CL, et al. Neuron, 2014 Jul 16. PMID 24952961, Free PMC Article
    5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    ankyrin repeat domain-containing protein SOWAHA
    Names
    ankyrin repeat domain 43
    ankyrin repeat domain-containing protein 43
    protein sosondowah homolog A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_183173.2 → NP_898996.2  ankyrin repeat domain-containing protein SOWAHA precursor

      See identical proteins and their annotated locations for NP_898996.2

      Status: VALIDATED

      Source sequence(s)
      AI451247, AL596095
      Consensus CDS
      CCDS24681.2
      UniProtKB/Swiss-Prot
      Q149C7, Q8BLS7
      Related
      ENSMUSP00000100561.3, ENSMUST00000104955.4
      Conserved Domains (3) summary
      cd00204
      Location:345 → 437
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam13637
      Location:345 → 404
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:344 → 381
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      53367405..53371022 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8BLS7.2 GenPept UniProtKB/Swiss-Prot:Q8BLS7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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