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    Rnf222 ring finger protein 222 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 363627, updated on 3-Apr-2024

    Summary

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    Official Symbol
    Rnf222provided by RGD
    Official Full Name
    ring finger protein 222provided by RGD
    Primary source
    RGD:1310573
    See related
    Ensembl:ENSRNOG00000022964 AllianceGenome:RGD:1310573
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1310573
    Summary
    Predicted to enable metal ion binding activity. Predicted to be integral component of membrane. Orthologous to human RNF222 (ring finger protein 222). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Testes (RPKM 12.3), Thymus (RPKM 12.0) and 2 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Rnf222 in Genome Data Viewer
    Location:
    10q24
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (54090219..54102161)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (53596751..53603305)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (55472794..55484850)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene myosin heavy chain 10 Neighboring gene large ribosomal subunit protein eL30-like Neighboring gene nudE neurodevelopment protein 1-like 1 Neighboring gene peroxiredoxin 6, pseudogene 1 Neighboring gene ribosomal protein L26

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    RING finger protein 222

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108828.1 → NP_001102298.1  RING finger protein 222

      See identical proteins and their annotated locations for NP_001102298.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473948
      UniProtKB/TrEMBL
      A6HFL3, D3ZTZ3
      Related
      ENSRNOP00000032127.3, ENSRNOT00000038454.4
      Conserved Domains (1) summary
      cd16564
      Location:13 → 65
      RING-HC_RNF222; RING finger, HC subclass, found in RING finger protein 222 (RNF222) and similar proteins

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      54090219..54102161
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008767847.4 → XP_008766069.1  RING finger protein 222 isoform X1

      See identical proteins and their annotated locations for XP_008766069.1

      UniProtKB/TrEMBL
      A6HFL3, D3ZTZ3
      Conserved Domains (1) summary
      cd16564
      Location:13 → 65
      RING-HC_RNF222; RING finger, HC subclass, found in RING finger protein 222 (RNF222) and similar proteins

    2. XM_063269511.1 → XP_063125581.1  RING finger protein 222 isoform X1

      UniProtKB/TrEMBL
      A6HFL3, D3ZTZ3

    3. XM_063269510.1 → XP_063125580.1  RING finger protein 222 isoform X1

      UniProtKB/TrEMBL
      A6HFL3, D3ZTZ3

    4. XM_063269512.1 → XP_063125582.1  RING finger protein 222 isoform X1

      UniProtKB/TrEMBL
      A6HFL3, D3ZTZ3

    5. XM_063269513.1 → XP_063125583.1  RING finger protein 222 isoform X1

      UniProtKB/TrEMBL
      A6HFL3, D3ZTZ3
    Nucleotide Protein Strain
    Heading Accession and Version

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