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    PACRG-AS2 PACRG antisense RNA 2 [ Homo sapiens (human) ]

    Gene ID: 101929239, updated on 17-Jun-2024

    Summary

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    Official Symbol
    PACRG-AS2provided by HGNC
    Official Full Name
    PACRG antisense RNA 2provided by HGNC
    Primary source
    HGNC:HGNC:40871
    See related
    Ensembl:ENSG00000225437 AllianceGenome:HGNC:40871
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 5.0) See more
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    Genomic context

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    See PACRG-AS2 in Genome Data Viewer
    Location:
    6q26
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (163042980..163054161, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (164406227..164417742, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (163464012..163475193, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene parkin coregulated Neighboring gene tRNA-Glu (TTC) 15-1 Neighboring gene VISTA enhancer hs1358 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:163385553-163386752 Neighboring gene ribosomal protein L34 pseudogene 15 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:163415840-163416477 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:163504027-163504596 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:163520272-163521085 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:163602019-163602599 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:163607166-163607736 Neighboring gene PACRG antisense RNA 3 Neighboring gene uncharacterized LOC105378095

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110871.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate 3' most structure and is shorter compared to variant 1.
      Source sequence(s)
      AK058177, AL137182
      Related
      ENST00000418665.1

    2. NR_110872.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AL137182, BC033504

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      163042980..163054161 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      164406227..164417742 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Research Materials