CAHM colon adenocarcinoma hypermethylated [Homo sapiens (human)] - Gene

Summary

Official Symbol: CAHMprovided by HGNC
Official Full Name: colon adenocarcinoma hypermethylatedprovided by HGNC
Primary source: HGNC:HGNC:42860
See related: Ensembl:ENSG00000270419 MIM:615930; AllianceGenome:HGNC:42860
Gene type: ncRNA
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: LINC00468
Orthologs: mouse all
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Genomic context

Location:: 6q26

Exon count:: 1

Annotation release	Status	Assembly	Chr	Location
RS_2023_10	current	GRCh38.p14 (GCF_000001405.40)	6	NC_000006.12 (163413065..163413950, complement)
RS_2023_10	current	T2T-CHM13v2.0 (GCF_009914755.1)	6	NC_060930.1 (164778231..164779116, complement)
105.20220307	previous assembly	GRCh37.p13 (GCF_000001405.25)	6	NC_000006.11 (163834097..163834982, complement)

Chromosome 6 - NC_000006.12 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

DNMT1 Mediated CAHM Repression Promotes Glioma Invasion via SPAK/JNK Pathway.
Title: DNMT1 Mediated CAHM Repression Promotes Glioma Invasion via SPAK/JNK Pathway.
Both the frequency of detection and the amount of methylated CAHM DNA released into plasma increased with increasing cancer stage. Methylated CAHM DNA shows promise as a plasma biomarker for use in screening for CRC.
Title: CAHM, a long non-coding RNA gene hypermethylated in colorectal neoplasia.

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Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

colon adenocarcinoma hypermethylated (non-protein coding)
long intergenic non-protein coding RNA 468

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.