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    BMS1P1 BMS1 pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 399761, updated on 10-Oct-2023

    Summary

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    Official Symbol
    BMS1P1provided by HGNC
    Official Full Name
    BMS1 pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:23649
    See related
    Ensembl:ENSG00000291069 AllianceGenome:HGNC:23649
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    BMS1P5; BMS1LP1; BMS1LP5
    Expression
    Ubiquitous expression in duodenum (RPKM 4.6), small intestine (RPKM 3.8) and 25 other tissues See more
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    Genomic context

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    See BMS1P1 in Genome Data Viewer
    Location:
    10q11.22
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (46786733..46811989)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (47674770..47700057)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (48927373..48952629, complement)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene glutamate dehydrogenase 1 pseudogene 2 Neighboring gene cathepsin L pseudogene 3 Neighboring gene dual specificity phosphatase 8 pseudogene 2 Neighboring gene RNA, 5S ribosomal pseudogene 311 Neighboring gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 13, pseudogene Neighboring gene FERM and PDZ domain containing 2 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Human paralogs of KIAA0187 were created through independent pericentromeric-directed and chromosome-specific duplication mechanisms. Crosier M, et al. Genome Res, 2002 Jan. PMID 11779832, Free PMC Article
    2. Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing. Fei T, et al. Proc Natl Acad Sci U S A, 2017 Jun 27. PMID 28611215, Free PMC Article
    3. A proteome-scale map of the human interactome network. Rolland T, et al. Cell, 2014 Nov 20. PMID 25416956, Free PMC Article
    4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Other Names

    • BMS1, ribosome biogenesis factor pseudogene 1
    • BMS1, ribosome biogenesis factor pseudogene 5
    • BMS1L pseudogene 1
    • BMS1L pseudogene 5

    Clone Names

    • KIAA0187

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_003611.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL731733
      Related
      ENST00000580094.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      46786733..46811989
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      47674770..47700057
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_006113.4: Suppressed sequence

      Description
      NG_006113.4: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.

    2. NM_001040053.1: Suppressed sequence

      Description
      NM_001040053.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein
    Heading Accession and Version

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