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    Sowahb sosondowah ankyrin repeat domain family member B [ Mus musculus (house mouse) ]

    Gene ID: 78088, updated on 8-May-2024

    Summary

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    Official Symbol
    Sowahbprovided by MGI
    Official Full Name
    sosondowah ankyrin repeat domain family member Bprovided by MGI
    Primary source
    MGI:MGI:1925338
    See related
    Ensembl:ENSMUSG00000045314 AllianceGenome:MGI:1925338
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ankrd56; 5730467H21Rik
    Summary
    Is expressed in embryo endoderm; eye; inner ear; and trunk somite. Orthologous to human SOWAHB (sosondowah ankyrin repeat domain family member B). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human all
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    Genomic context

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    See Sowahb in Genome Data Viewer
    Location:
    5 E2; 5 47.29 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (93188981..93192910, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (93041123..93045022, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_13662 Neighboring gene predicted gene, 25521 Neighboring gene STARR-seq mESC enhancer starr_13663 Neighboring gene predicted gene, 52780 Neighboring gene predicted gene, 22915 Neighboring gene septin 11 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:93522357-93522466 Neighboring gene STARR-seq mESC enhancer starr_13664 Neighboring gene VISTA enhancer mm39

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multiplex Chromosomal Exome Sequencing Accelerates Identification of ENU-Induced Mutations in the Mouse. Sun M, et al. G3 (Bethesda), 2012 Jan. PMID 22384391, Free PMC Article
    2. Prospective isolation and global gene expression analysis of definitive and visceral endoderm. Sherwood RI, et al. Dev Biol, 2007 Apr 15. PMID 17328885
    3. A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Yokoyama S, et al. Dev Cell, 2009 Dec. PMID 20059953, Free PMC Article
    4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Chemically induced (ENU) (1)  1 citation
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    ankyrin repeat domain-containing protein SOWAHB
    Names
    ankyrin repeat domain 56
    ankyrin repeat domain-containing protein 56
    protein sosondowah homolog B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_175270.5 → NP_780479.1  ankyrin repeat domain-containing protein SOWAHB

      See identical proteins and their annotated locations for NP_780479.1

      Status: VALIDATED

      Source sequence(s)
      AC125233
      Consensus CDS
      CCDS19435.1
      UniProtKB/Swiss-Prot
      Q8BZS7, Q8BZW2
      Related
      ENSMUSP00000055267.6, ENSMUST00000061328.6
      Conserved Domains (3) summary
      cd00204
      Location:597 → 674
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam13637
      Location:598 → 657
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:598 → 634
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      93188981..93192910 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8BZW2.1 GenPept UniProtKB/Swiss-Prot:Q8BZW2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
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