SLC8A1-AS1 SLC8A1 antisense RNA 1 [Homo sapiens (human)] - Gene

Summary

Official Symbol: SLC8A1-AS1provided by HGNC
Official Full Name: SLC8A1 antisense RNA 1provided by HGNC
Primary source: HGNC:HGNC:44102
See related: Ensembl:ENSG00000227028 AllianceGenome:HGNC:44102
Gene type: ncRNA
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression: Biased expression in esophagus (RPKM 1.2), testis (RPKM 0.2) and 5 other tissues See more
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Genomic context

Location:: 2p22.1

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2023_10	current	GRCh38.p14 (GCF_000001405.40)	2	NC_000002.12 (39917634..40255209)
RS_2023_10	current	T2T-CHM13v2.0 (GCF_009914755.1)	2	NC_060926.1 (39926628..40264224)
105.20220307	previous assembly	GRCh37.p13 (GCF_000001405.25)	2	NC_000002.11 (40144774..40482349)

Chromosome 2 - NC_000002.12 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Association of Circulating Biomarkers of lnc-IGSF3-1:1, SCOC-AS1, and SLC8A1-AS1 with Salt Sensitivity of Blood Pressure in Chinese Population.
Title: Association of Circulating Biomarkers of lnc-IGSF3-1:1, SCOC-AS1, and SLC8A1-AS1 with Salt Sensitivity of Blood Pressure in Chinese Population.
SLC8A1 antisense RNA 1 suppresses papillary thyroid cancer malignant progression via the FUS RNA binding protein (FUS)/NUMB like endocytic adaptor protein (Numbl) axis.
Title: SLC8A1 antisense RNA 1 suppresses papillary thyroid cancer malignant progression via the FUS RNA binding protein (FUS)/NUMB like endocytic adaptor protein (Numbl) axis.

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Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
ABCC9 gene polymorphism is associated with hippocampal sclerosis of aging pathology. EBI GWAS Catalog EBI GWAS CatalogPubMed
Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization. EBI GWAS Catalog EBI GWAS CatalogPubMed
Genome-wide association study of neurocognitive impairment and dementia in HIV-infected adults. EBI GWAS Catalog EBI GWAS CatalogPubMed

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

D2S193E (e-PCR)
- UniSTS:147470

RH121685 (e-PCR)
- UniSTS:134424

D2S193E (e-PCR)
- UniSTS:21274

SLC8A1__3866 (e-PCR)
- UniSTS:462930

WI-16830 (e-PCR)
- UniSTS:58200

D2S2749 (e-PCR)
- UniSTS:7781

RH121526 (e-PCR)
- UniSTS:134267

Cda11b02 (e-PCR)
- UniSTS:33405

SHGC-61992 (e-PCR)
- UniSTS:20670

D2S2658 (e-PCR)
- UniSTS:63696

RH91099 (e-PCR)
- UniSTS:87508

G10124 (e-PCR)
- UniSTS:23509

D2S1886 (e-PCR)
- UniSTS:153578

D2S1887 (e-PCR)
- UniSTS:153579

D2S2238 (e-PCR)
- UniSTS:13821

Other Names

SLC8A1 antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.