acs-4 long-chain-fatty-acid--CoA ligase [Caenorhabditis elegans] - Gene

Summary

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Gene symbol: acs-4
Gene description: long-chain-fatty-acid--CoA ligase
Locus tag: CELE_F37C12.7
See related: AllianceGenome:WB:WBGene00018152
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable long-chain fatty acid-CoA ligase activity. Predicted to be involved in long-chain fatty acid metabolic process; long-chain fatty-acyl-CoA metabolic process; and neuron differentiation. Located in lipid droplet. Is expressed in hypodermis; intestine; neurons; pharynx; and somatic nervous system. Human ortholog(s) of this gene implicated in asthma; breast cancer; intellectual disability; non-syndromic X-linked intellectual disability 63; and prostate cancer. Orthologous to human ACSL3 (acyl-CoA synthetase long chain family member 3) and ACSL4 (acyl-CoA synthetase long chain family member 4). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See acs-4 in Genome Data Viewer

Location:: chromosome: III

Exon count:: 6

Sequence:: Chromosome: III; NC_003281.10 (7167838..7170990)

Chromosome III - NC_003281.10 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Study examined and observed an impact of fatty acid (FA) synthesis and mobilization by lipolysis in somatic tissues on oocyte fate in Caenorhabditis elegans. The subsequent genetic analysis identified ACS-4, an acyl-CoA synthetase and its FA-CoA product, as key germline factors that mediate the role of FA in promoting oocyte fate through protein myristoylation.
Title: Fatty Acids Regulate Germline Sex Determination through ACS-4-Dependent Myristoylation.
ACS-4 localizes to the surface of lipid droplets in the C. elegans intestine and skin.
Title: Lipidomic and proteomic analysis of Caenorhabditis elegans lipid droplets and identification of ACS-4 as a lipid droplet-associated protein.

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

F37C12.7 (e-PCR)
- UniSTS:310180

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables long-chain fatty acid-CoA ligase activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in long-chain fatty acid metabolic process	IBA Inferred from Biological aspect of Ancestor more info
involved_in long-chain fatty-acyl-CoA metabolic process	IBA Inferred from Biological aspect of Ancestor more info
involved_in neuron differentiation	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in endoplasmic reticulum	IBA Inferred from Biological aspect of Ancestor more info
is_active_in lipid droplet	IBA Inferred from Biological aspect of Ancestor more info
located_in lipid droplet	IDA Inferred from Direct Assay more info	PubMed
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: long-chain-fatty-acid--CoA ligase

NP_498568.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003281.10 Reference assembly

Range

7167838..7170990

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_066167.9 → NP_498568.1 long-chain-fatty-acid--CoA ligase [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_498568.1

Status: REVIEWED

UniProtKB/TrEMBL

Q20121

Conserved Domains (2) summary

cd05927
Location:137 → 725

LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

PLN02387
Location:91 → 725

PLN02387; long-chain-fatty-acid-CoA ligase family protein