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    Fn1 fibronectin 1 [ Mus musculus (house mouse) ]

    Gene ID: 14268, updated on 4-May-2024

    Summary

    Official Symbol
    Fn1provided by MGI
    Official Full Name
    fibronectin 1provided by MGI
    Primary source
    MGI:MGI:95566
    See related
    Ensembl:ENSMUSG00000026193 AllianceGenome:MGI:95566
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Fn; Fn-1; E330027I09
    Summary
    Enables peptidase activator activity. Acts upstream of or within several processes, including calcium-independent cell-matrix adhesion; cell-substrate junction assembly; and positive regulation of axon extension. Located in apical plasma membrane and basement membrane. Is expressed in several structures, including alimentary system; cardiovascular system; egg cylinder; embryo mesenchyme; and genitourinary system. Human ortholog(s) of this gene implicated in calcium oxalate nephrolithiasis; membranoproliferative glomerulonephritis; and spondylometaphyseal dysplasia corner fracture type. Orthologous to human FN1 (fibronectin 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in placenta adult (RPKM 211.5), liver E18 (RPKM 196.6) and 22 other tissues See more
    Orthologs
    NEW
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    Genomic context

    Location:
    1 C3; 1 36.05 cM
    Exon count:
    46
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (71624632..71692439, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (71585473..71653280, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_01239 Neighboring gene STARR-seq mESC enhancer starr_01240 Neighboring gene predicted gene 6947 Neighboring gene STARR-seq mESC enhancer starr_01242 Neighboring gene STARR-positive B cell enhancer ABC_E5770 Neighboring gene 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase Neighboring gene STARR-seq mESC enhancer starr_01248 Neighboring gene STARR-seq mESC enhancer starr_01250 Neighboring gene apolipoprotein L 7d Neighboring gene PRP4 pre-mRNA processing factor 4 homolog pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC117493

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables extracellular matrix structural constituent RCA
    inferred from Reviewed Computational Analysis
    more info
    PubMed 
    enables heparin binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables integrin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables integrin binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables mercury ion binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables peptidase activator activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables protease binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables proteoglycan binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables proteoglycan binding ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    enables receptor ligand activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables signaling receptor binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables signaling receptor binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within acute-phase response IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within angiogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in biological process involved in interaction with symbiont ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within calcium-independent cell-matrix adhesion IDA
    Inferred from Direct Assay
    more info
    PubMed 
    acts_upstream_of_or_within cell adhesion IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in cell-matrix adhesion IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within cell-matrix adhesion IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in cell-matrix adhesion ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in cell-substrate junction assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within cell-substrate junction assembly IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in cellular response to interleukin-1 ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in cellular response to mercury ion ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in endodermal cell differentiation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in extracellular matrix organization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in glial cell migration ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in heart development IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in integrin activation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in integrin-mediated signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of apoptotic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of collagen biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of monocyte activation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in negative regulation of monocyte activation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of transforming growth factor beta production ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in nervous system development IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in neural crest cell migration involved in autonomic nervous system development ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    involved_in peptide cross-linking ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within positive regulation of axon extension IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in positive regulation of cell migration ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of cell population proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of chemotaxis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of fibroblast proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of gene expression ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of substrate-dependent cell migration, cell attachment to substrate ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of ERK1 and ERK2 cascade ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within regulation of cell shape IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of protein phosphorylation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in response to muscle activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in substrate adhesion-dependent cell spreading ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within wound healing IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001276408.1NP_001263337.1  fibronectin isoform b precursor

      See identical proteins and their annotated locations for NP_001263337.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an in-frame exon in the coding region, compared to variant 1. The encoded isoform (b) is shorter than isoform a.
      Source sequence(s)
      AC124821, AK147249, AK147683, CJ098561, CJ099024, CN534124
      Consensus CDS
      CCDS78612.1
      UniProtKB/TrEMBL
      A0A087WR50, Q3UGY5
      Related
      ENSMUSP00000140471.2, ENSMUST00000188894.7
      Conserved Domains (5) summary
      smart00059
      Location:353401
      FN2; Fibronectin type 2 domain
      smart00058
      Location:187231
      FN1; Fibronectin type 1 domain
      cd00061
      Location:22932332
      FN1; Fibronectin type 1 domain, approximately 40 residue long with two conserved disulfide bridges. FN1 is one of three types of internal repeats which combine to form larger domains within fibronectin. Fibronectin, a plasma protein that binds cell surfaces ...
      pfam00039
      Location:232271
      fn1; Fibronectin type I domain
      pfam00041
      Location:15421622
      fn3; Fibronectin type III domain
    2. NM_001276409.1NP_001263338.1  fibronectin isoform c precursor

      See identical proteins and their annotated locations for NP_001263338.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an in-frame exon and uses an alternate in-frame splice site in the coding region, compared to variant 1. The encoded isoform (c) is shorter than isoform a.
      Source sequence(s)
      AC124821, AK147315, CJ098561
      Consensus CDS
      CCDS78611.1
      UniProtKB/TrEMBL
      Q3UGY5, Q3UHL6
      Related
      ENSMUSP00000140975.2, ENSMUST00000187938.7
      Conserved Domains (5) summary
      smart00059
      Location:353401
      FN2; Fibronectin type 2 domain
      smart00058
      Location:187231
      FN1; Fibronectin type 1 domain
      cd00061
      Location:22682307
      FN1; Fibronectin type 1 domain, approximately 40 residue long with two conserved disulfide bridges. FN1 is one of three types of internal repeats which combine to form larger domains within fibronectin. Fibronectin, a plasma protein that binds cell surfaces ...
      pfam00039
      Location:232271
      fn1; Fibronectin type I domain
      pfam00041
      Location:15421622
      fn3; Fibronectin type III domain
    3. NM_001276410.1NP_001263339.1  fibronectin isoform d precursor

      See identical proteins and their annotated locations for NP_001263339.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) lacks two in-frame exons in the coding region, compared to variant 1. The encoded isoform (d) is shorter than isoform a.
      Source sequence(s)
      AC124821, AK147315, AK171339, CJ098561, CK639246, CN532664, CN536551, CN692112
      Consensus CDS
      CCDS78609.1
      UniProtKB/TrEMBL
      A0A087WSN6, Q3TCF1
      Related
      ENSMUSP00000141123.2, ENSMUST00000186129.7
      Conserved Domains (5) summary
      smart00059
      Location:353401
      FN2; Fibronectin type 2 domain
      smart00058
      Location:187231
      FN1; Fibronectin type 1 domain
      cd00061
      Location:22032242
      FN1; Fibronectin type 1 domain, approximately 40 residue long with two conserved disulfide bridges. FN1 is one of three types of internal repeats which combine to form larger domains within fibronectin. Fibronectin, a plasma protein that binds cell surfaces ...
      pfam00039
      Location:232271
      fn1; Fibronectin type I domain
      pfam00041
      Location:15421622
      fn3; Fibronectin type III domain
    4. NM_001276411.1NP_001263340.1  fibronectin isoform e precursor

      See identical proteins and their annotated locations for NP_001263340.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) lacks two in-frame exons and uses an alternate in-frame splice site in the coding region, compared to variant 1. The encoded isoform (e) is shorter than isoform a.
      Source sequence(s)
      AC124821, AK147663, BC138421, CJ098561
      Consensus CDS
      CCDS78608.1
      UniProtKB/TrEMBL
      B9EHT6, Q3TCF1
      Related
      ENSMUSP00000140816.2, ENSMUST00000190780.7
      Conserved Domains (6) summary
      smart00059
      Location:353401
      FN2; Fibronectin type 2 domain
      smart00058
      Location:187231
      FN1; Fibronectin type 1 domain
      cd00061
      Location:21782217
      FN1; Fibronectin type 1 domain, approximately 40 residue long with two conserved disulfide bridges. FN1 is one of three types of internal repeats which combine to form larger domains within fibronectin. Fibronectin, a plasma protein that binds cell surfaces ...
      cd00063
      Location:18131893
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:14501529
      fn3; Fibronectin type III domain
      pfam00039
      Location:232271
      fn1; Fibronectin type I domain
    5. NM_001276412.1NP_001263341.1  fibronectin isoform f precursor

      Status: VALIDATED

      Description
      Transcript Variant: This variant (6) lacks an in-frame exon and uses an alternate in-frame splice site in the coding region, compared to variant 1. The encoded isoform (f) is shorter than isoform a.
      Source sequence(s)
      AC124821, AK147315, AK147639, CJ098561
      Consensus CDS
      CCDS78610.1
      UniProtKB/TrEMBL
      A0A087WS56, Q3UH17
      Related
      ENSMUSP00000140907.2, ENSMUST00000188674.7
      Conserved Domains (6) summary
      smart00059
      Location:353401
      FN2; Fibronectin type 2 domain
      smart00058
      Location:187231
      FN1; Fibronectin type 1 domain
      cd00061
      Location:21732212
      FN1; Fibronectin type 1 domain, approximately 40 residue long with two conserved disulfide bridges. FN1 is one of three types of internal repeats which combine to form larger domains within fibronectin. Fibronectin, a plasma protein that binds cell surfaces ...
      cd00063
      Location:19031983
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:14501529
      fn3; Fibronectin type III domain
      pfam00039
      Location:232271
      fn1; Fibronectin type I domain
    6. NM_001276413.1NP_001263342.1  fibronectin isoform g precursor

      See identical proteins and their annotated locations for NP_001263342.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (7) lacks two in-frame exons and uses an alternate in-frame splice site in the coding region, compared to variant 1. The encoded isoform (g) is shorter than isoform a.
      Source sequence(s)
      AC124821, AK147701, AK171339, CJ098561
      Consensus CDS
      CCDS78607.1
      UniProtKB/TrEMBL
      B7ZNJ1, Q3UH17
      Related
      ENSMUSP00000139702.2, ENSMUST00000189821.7
      Conserved Domains (5) summary
      smart00059
      Location:353401
      FN2; Fibronectin type 2 domain
      smart00058
      Location:187231
      FN1; Fibronectin type 1 domain
      cd00061
      Location:20832122
      FN1; Fibronectin type 1 domain, approximately 40 residue long with two conserved disulfide bridges. FN1 is one of three types of internal repeats which combine to form larger domains within fibronectin. Fibronectin, a plasma protein that binds cell surfaces ...
      pfam00039
      Location:232271
      fn1; Fibronectin type I domain
      pfam00041
      Location:15421622
      fn3; Fibronectin type III domain
    7. NM_010233.2NP_034363.1  fibronectin isoform a precursor

      See identical proteins and their annotated locations for NP_034363.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a).
      Source sequence(s)
      AC124821, AK133868, CF166960, CF727068, CJ098561, CK637170, CK638401, CN460535, CN534124, CN538894, CN694596
      Consensus CDS
      CCDS15031.1
      UniProtKB/Swiss-Prot
      G5E8B8, P11276, Q61567, Q61568, Q61569, Q64233, Q80UI4
      UniProtKB/TrEMBL
      Q3UGY5
      Related
      ENSMUSP00000054499.7, ENSMUST00000055226.13
      Conserved Domains (6) summary
      smart00059
      Location:353401
      FN2; Fibronectin type 2 domain
      smart00058
      Location:187231
      FN1; Fibronectin type 1 domain
      cd00061
      Location:23842423
      FN1; Fibronectin type 1 domain, approximately 40 residue long with two conserved disulfide bridges. FN1 is one of three types of internal repeats which combine to form larger domains within fibronectin. Fibronectin, a plasma protein that binds cell surfaces ...
      cd00063
      Location:19942074
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00039
      Location:232271
      fn1; Fibronectin type I domain
      pfam00041
      Location:15411620
      fn3; Fibronectin type III domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      71624632..71692439 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017315837.2XP_017171326.1  fibronectin isoform X5

      UniProtKB/TrEMBL
      Q3UH17
      Conserved Domains (5) summary
      smart00059
      Location:353401
      FN2; Fibronectin type 2 domain
      smart00058
      Location:187231
      FN1; Fibronectin type 1 domain
      cd00061
      Location:21742213
      FN1; Fibronectin type 1 domain, approximately 40 residue long with two conserved disulfide bridges. FN1 is one of three types of internal repeats which combine to form larger domains within fibronectin. Fibronectin, a plasma protein that binds cell surfaces ...
      pfam00039
      Location:232271
      fn1; Fibronectin type I domain
      pfam00041
      Location:16331713
      fn3; Fibronectin type III domain
    2. XM_030248098.1XP_030103958.1  fibronectin isoform X3

      UniProtKB/TrEMBL
      Q3TCF1
      Conserved Domains (5) summary
      smart00059
      Location:353401
      FN2; Fibronectin type 2 domain
      smart00058
      Location:187231
      FN1; Fibronectin type 1 domain
      cd00061
      Location:22692308
      FN1; Fibronectin type 1 domain, approximately 40 residue long with two conserved disulfide bridges. FN1 is one of three types of internal repeats which combine to form larger domains within fibronectin. Fibronectin, a plasma protein that binds cell surfaces ...
      pfam00039
      Location:232271
      fn1; Fibronectin type I domain
      pfam00041
      Location:16331713
      fn3; Fibronectin type III domain
    3. XM_006495699.4XP_006495762.1  fibronectin isoform X2

      See identical proteins and their annotated locations for XP_006495762.1

      UniProtKB/TrEMBL
      Q3TCF1
      Conserved Domains (5) summary
      smart00059
      Location:353401
      FN2; Fibronectin type 2 domain
      smart00058
      Location:187231
      FN1; Fibronectin type 1 domain
      cd00061
      Location:22942333
      FN1; Fibronectin type 1 domain, approximately 40 residue long with two conserved disulfide bridges. FN1 is one of three types of internal repeats which combine to form larger domains within fibronectin. Fibronectin, a plasma protein that binds cell surfaces ...
      pfam00039
      Location:232271
      fn1; Fibronectin type I domain
      pfam00041
      Location:16331713
      fn3; Fibronectin type III domain
    4. XM_006495700.4XP_006495763.1  fibronectin isoform X4

      UniProtKB/TrEMBL
      Q3UH17
      Conserved Domains (5) summary
      smart00059
      Location:353401
      FN2; Fibronectin type 2 domain
      smart00058
      Location:187231
      FN1; Fibronectin type 1 domain
      cd00061
      Location:22642303
      FN1; Fibronectin type 1 domain, approximately 40 residue long with two conserved disulfide bridges. FN1 is one of three types of internal repeats which combine to form larger domains within fibronectin. Fibronectin, a plasma protein that binds cell surfaces ...
      pfam00039
      Location:232271
      fn1; Fibronectin type I domain
      pfam00041
      Location:16331713
      fn3; Fibronectin type III domain
    5. XM_006495697.4XP_006495760.1  fibronectin isoform X1

      UniProtKB/TrEMBL
      Q3UGY5
      Conserved Domains (5) summary
      smart00059
      Location:353401
      FN2; Fibronectin type 2 domain
      smart00058
      Location:187231
      FN1; Fibronectin type 1 domain
      cd00061
      Location:23592398
      FN1; Fibronectin type 1 domain, approximately 40 residue long with two conserved disulfide bridges. FN1 is one of three types of internal repeats which combine to form larger domains within fibronectin. Fibronectin, a plasma protein that binds cell surfaces ...
      pfam00039
      Location:232271
      fn1; Fibronectin type I domain
      pfam00041
      Location:16331713
      fn3; Fibronectin type III domain