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    Ttc32 tetratricopeptide repeat domain 32 [ Mus musculus (house mouse) ]

    Gene ID: 75516, updated on 30-Apr-2024

    Summary

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    Official Symbol
    Ttc32provided by MGI
    Official Full Name
    tetratricopeptide repeat domain 32provided by MGI
    Primary source
    MGI:MGI:1922766
    See related
    Ensembl:ENSMUSG00000066637 AllianceGenome:MGI:1922766
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700013G20Rik
    Summary
    Orthologous to human TTC32 (tetratricopeptide repeat domain 32). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in adrenal adult (RPKM 3.3), kidney adult (RPKM 2.8) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    Location:
    12 A1.1; 12 3.98 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (9079997..9086394)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (9029997..9036394)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene matrilin 3 Neighboring gene WD repeat domain 35 Neighboring gene STARR-seq mESC enhancer starr_31525 Neighboring gene predicted gene, 46323 Neighboring gene predicted gene 7099

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    tetratricopeptide repeat protein 32
    Names
    TPR repeat protein 32

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029321.2 → NP_083597.1  tetratricopeptide repeat protein 32

      See identical proteins and their annotated locations for NP_083597.1

      Status: PROVISIONAL

      Source sequence(s)
      AC110376, AC132572
      Consensus CDS
      CCDS25808.1
      UniProtKB/Swiss-Prot
      Q9DAC7
      Related
      ENSMUSP00000082891.2, ENSMUST00000085741.2
      Conserved Domains (3) summary
      sd00006
      Location:55 → 83
      TPR; TPR repeat [structural motif]
      pfam00515
      Location:92 → 122
      TPR_1; Tetratricopeptide repeat
      pfam13414
      Location:55 → 120
      TPR_11; TPR repeat

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      9079997..9086394
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9DAC7.1 GenPept UniProtKB/Swiss-Prot:Q9DAC7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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