U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LINC01521 long intergenic non-protein coding RNA 1521 [ Homo sapiens (human) ]

    Gene ID: 54944, updated on 10-Oct-2023

    Summary

    Go to the top of the page Help
    Official Symbol
    LINC01521provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1521provided by HGNC
    Primary source
    HGNC:HGNC:26029
    See related
    AllianceGenome:HGNC:26029
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LINC01521 in Genome Data Viewer
    Location:
    22q12.2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (31346759..31351155)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (31810721..31815117)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (31742745..31747141)

    Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18856 Neighboring gene RNA, 5S ribosomal pseudogene 496 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:31724965-31725649 Neighboring gene POZ/BTB and AT hook containing zinc finger 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:31734465-31734965 Neighboring gene PIK3IP1 divergent transcript Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:31736003-31736977 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:31738653-31739190 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:31739191-31739729 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:31739730-31740267 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13627 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13628 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13629 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13630 Neighboring gene RNA, U6 small nuclear 338, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13631 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:31795617-31796522 Neighboring gene developmentally regulated GTP binding protein 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A genome annotation-driven approach to cloning the human ORFeome. Collins JE, et al. Genome Biol, 2004. PMID 15461802, Free PMC Article
    2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

    Go to the top of the page Help

    Markers

    Clone Names

    • FLJ20464

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_120386.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC005003, AK000471, BC004550, DA001894

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

      Range
      31346759..31351155
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060946.1 Alternate T2T-CHM13v2.0

      Range
      31810721..31815117
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_017834.1: Suppressed sequence

      Description
      NM_017834.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Miscellaneous