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    LOC101927691 uncharacterized LOC101927691 [ Homo sapiens (human) ]

    Gene ID: 101927691, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC101927691
    Gene description
    uncharacterized LOC101927691
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in stomach (RPKM 1.7) and brain (RPKM 0.1) See more
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    Genomic context

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    See LOC101927691 in Genome Data Viewer
    Location:
    6p25.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (868498..876613)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (728965..737088)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (868498..876613)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene exocyst complex component 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23857 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23858 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:692466-693352 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:694782-695290 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:701331-701850 Neighboring gene MARK2 pseudogene 18 Neighboring gene MPRA-validated peak5620 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16818 Neighboring gene uncharacterized LOC105374873 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancers GRCh37_chr6:829333-829880 and GRCh37_chr6:829881-830426 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:839153-839702 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:862355-863554 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:867961-868143 Neighboring gene uncharacterized LOC124901236 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:927074-927574 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:927575-928075 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:961366-961866 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:961867-962367 Neighboring gene long intergenic non-protein coding RNA 1622 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:995434-995953 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23859 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23860 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23861 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23862 Neighboring gene NANOG hESC enhancer GRCh37_chr6:1028326-1028839 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:1066368-1067567 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:1100679-1101878

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110853.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL356130, CR936636

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      868498..876613
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      728965..737088
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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