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    rpl8 ribosomal protein L8 [ Danio rerio (zebrafish) ]

    Gene ID: 393686, updated on 27-Mar-2024

    Summary

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    Official Symbol
    rpl8provided by ZNC
    Official Full Name
    ribosomal protein L8provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1670
    See related
    Ensembl:ENSDARG00000014867 AllianceGenome:ZFIN:ZDB-GENE-040426-1670
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:73105; zgc:77641
    Summary
    Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to act upstream of or within translation. Predicted to be located in cytoplasm and ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL8 (ribosomal protein L8). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (33323104..33329695, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (33512358..33518949, complement)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene lectin Neighboring gene ubiquitin specific peptidase 9 Neighboring gene DEAD-box helicase 3 X-linked a Neighboring gene nyctalopin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. TiO(2) nanoparticles and BPA are combined to impair the development of offspring zebrafish after parental coexposure. Chen L, et al. Chemosphere, 2019 Feb. PMID 30448753
    2. Activation of aryl hydrocarbon receptor by dioxin directly shifts gut microbiota in zebrafish. Sun Y, et al. Environ Pollut, 2019 Dec. PMID 31671369
    3. Tebuconazole induced oxidative stress related hepatotoxicity in adult and larval zebrafish (Danio rerio). Li S, et al. Chemosphere, 2020 Feb. PMID 31683439
    4. Extracellular Vesicles Released by Colorectal Cancer Cell Lines Modulate Innate Immune Response in Zebrafish Model: The Possible Role of Human Endogenous Retroviruses. Ferrari L, et al. Int J Mol Sci, 2019 Jul 26. PMID 31357477, Free PMC Article
    5. Chronic exposure to environmental levels of cis-bifenthrin: Enantioselectivity and reproductive effects on zebrafish (Danio rerio). Xiang D, et al. Environ Pollut, 2019 Aug. PMID 31078089

    See all (86) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC73105

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cytoplasmic translation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    large ribosomal subunit protein uL2; 60S ribosomal protein L8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200713.1 → NP_957007.1  large ribosomal subunit protein uL2

      See identical proteins and their annotated locations for NP_957007.1

      Status: PROVISIONAL

      Source sequence(s)
      BC059473
      UniProtKB/Swiss-Prot
      Q6P0V6
      Related
      ENSDARP00000115147.1, ENSDART00000140039.3
      Conserved Domains (1) summary
      cl40667
      Location:1 → 252
      RplB; Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      33323104..33329695 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005167684.1 → XP_005167741.1  60S ribosomal protein L8 isoform X1

      See identical proteins and their annotated locations for XP_005167741.1

      UniProtKB/Swiss-Prot
      Q6P0V6
      Conserved Domains (1) summary
      cl40667
      Location:1 → 252
      RplB; Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6P0V6.3 GenPept UniProtKB/Swiss-Prot:Q6P0V6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.