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    AT5G62580 ARM repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836379, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT5G62580
    Gene description
    ARM repeat superfamily protein
    Primary source
    Araport:AT5G62580
    Locus tag
    AT5G62580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K19B1.19; K19B1_19
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (25119511..25122578)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Calmodulin binding protein-like protein Neighboring gene uncharacterized protein Neighboring gene succinate dehydrogenase subunit Neighboring gene ARM repeat superfamily protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Green sperm. Identification of male gamete promoters in Arabidopsis. Engel ML, et al. Plant Physiol, 2005 Aug. PMID 16055690, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
    3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The expression of VEX1 during pollen development is reported.
      Title: Green sperm. Identification of male gamete promoters in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_001345554.1
    NM_125653.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in microtubule IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ARM repeat superfamily protein
    NP_001318866.1
    • ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G27210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25119511..25122578
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345554.1 → NP_001318866.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NPR6, Q8VYW3, Q9FJI8
      UniProtKB/TrEMBL
      A0A178URX0, A0A5S9YGL4
      Conserved Domains (1) summary
      sd00044
      Location:10 → 32
      HEAT; HEAT repeat [structural motif]

    2. NM_125653.4 → NP_201064.2  ARM repeat superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201064.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NPR6, Q8VYW3, Q9FJI8
      UniProtKB/TrEMBL
      A0A178URX0, A0A5S9YGL4
      Conserved Domains (1) summary
      sd00044
      Location:10 → 32
      HEAT; HEAT repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6NPR6.1

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