U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    HYDIN2 HYDIN axonemal central pair apparatus protein 2 (pseudogene) [ Homo sapiens (human) ]

    Gene ID: 100288805, updated on 10-Oct-2023

    Summary

    Go to the top of the page Help
    Official Symbol
    HYDIN2provided by HGNC
    Official Full Name
    HYDIN axonemal central pair apparatus protein 2 (pseudogene)provided by HGNC
    Primary source
    HGNC:HGNC:33129
    See related
    MIM:610813; AllianceGenome:HGNC:33129
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    HYDINP1
    Expression
    Biased expression in testis (RPKM 2.1), brain (RPKM 0.8) and 12 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    1q21.1
    Exon count:
    56
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (146486332..146822034)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (147986385..148322048, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 Unlocalized Scaffold NT_167207.1 (132569..468683, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371235 Neighboring gene uncharacterized LOC124904407 Neighboring gene uncharacterized LOC105371233 Neighboring gene RNA, 5S ribosomal pseudogene 536 Neighboring gene uncharacterized LOC124900456 Neighboring gene NBPF member 12 Neighboring gene profilin 1 pseudogene 8

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The birth of a human-specific neural gene by incomplete duplication and gene fusion. Dougherty ML, et al. Genome Biol, 2017 Mar 9. PMID 28279197, Free PMC Article
    2. A 360-kb interchromosomal duplication of the human HYDIN locus. Doggett NA, et al. Genomics, 2006 Dec. PMID 16938426
    3. The full-ORF clone resource of the German cDNA Consortium. Bechtel S, et al. BMC Genomics, 2007 Oct 31. PMID 17974005, Free PMC Article
    4. The sequence and analysis of duplication-rich human chromosome 16. Martin J, et al. Nature, 2004 Dec 23. PMID 15616553
    5. Prediction of the coding sequences of unidentified human genes. XX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. Nagase T, et al. DNA Res, 2001 Apr 27. PMID 11347906

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Other Names

    • HYDIN, axonemal central pair apparatus protein pseudogene 1
    • HYDIN2, axonemal central pair apparatus protein (pseudogene)
    • hydrocephalus inducing homolog 2

    Clone Names

    • FLJ14665, KIAA1864, DKFZp761B238, DKFZp761M1613

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables triplet codon-amino acid adaptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_103556.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AB058767, AC241929, AC245407, AK027571, AL833826, AL834340, BG292092, DA303757, DR000174, H53415

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      146486332..146822034
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      147986385..148322048 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NR_049745.1: Suppressed sequence

      Description
      NR_049745.1: This RefSeq was suppressed because it was not a good representation of the HYDIN2 locus.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools