Klrb1c killer cell lectin like receptor B1C [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Klrb1cprovided by RGD
Official Full Name: killer cell lectin like receptor B1Cprovided by RGD
Primary source: RGD:1583336
See related: Ensembl:ENSRNOG00000007811 AllianceGenome:RGD:1583336
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Klrb1f; NKR-P1F
Summary: Predicted to enable carbohydrate binding activity. Predicted to be integral component of membrane. Orthologous to human KLRB1 (killer cell lectin like receptor B1). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Spleen (RPKM 62.2), Lung (RPKM 23.9) and 6 other tissues See more
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Genomic context

Location:: 4q42

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	4	NC_086022.1 (164068249..164080724)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	4	NC_051339.1 (162380773..162394688)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	4	NC_005103.4 (162528614..162553421)

Chromosome 4 - NC_086022.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

NKR-P1F and NKR-P1G receptors expressed by NK cells and T lymphocytes in liver and gut have been functionally characterized.
Title: Functional characterization of a conserved pair of NKR-P1 receptors expressed by NK cells and T lymphocytes in liver and gut.

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General gene information

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Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables carbohydrate binding	IEA Inferred from Electronic Annotation more info
enables signaling receptor activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in regulation of natural killer cell mediated cytotoxicity	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in cell surface	IBA Inferred from Biological aspect of Ancestor more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: killer cell lectin-like receptor subfamily B member 1F

Names: NKR-P1B protein; killer cell lectin-like receptor subfamily B member 1B; killer cell lectin-like receptor subfamily B member 1C; natural killer cell surface protein NKR-P1F

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001085403.2 → NP_001078872.1 killer cell lectin-like receptor subfamily B member 1F

See identical proteins and their annotated locations for NP_001078872.1

Status: VALIDATED

Source sequence(s)

JAXUCZ010000004

UniProtKB/Swiss-Prot

Q63378

UniProtKB/TrEMBL

A6IM28

Related

ENSRNOP00000010312.2, ENSRNOT00000010312.5

Conserved Domains (1) summary

cd03593
Location:94 → 212

CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)