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    CG3104 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 33486, updated on 10-May-2024

    Summary

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    Official Symbol
    CG3104provided by FlyBase
    Primary source
    FLYBASE:FBgn0031473
    Locus tag
    Dmel_CG3104
    See related
    AllianceGenome:FB:FBgn0031473
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG3104
    Summary
    Predicted to enable cytoskeletal anchor activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in plasma membrane. Is expressed in organism. Orthologous to human ANKRD29 (ankyrin repeat domain 29). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See CG3104 in Genome Data Viewer
    Location:
    23B5-23B5; 2-7 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (2848989..2855778, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (2848989..2855778, complement)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Ribosomal protein S21 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The insulator protein Suppressor of Hairy-wing is an essential transcriptional repressor in the Drosophila ovary. Soshnev AA, et al. Development, 2013 Sep. PMID 23884443, Free PMC Article
    2. A new test for detecting ongoing selection. Inomata N, et al. Genetica, 2008 Jul. PMID 17965838
    3. The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. Bellen HJ, et al. Genetics, 2004 Jun. PMID 15238527, Free PMC Article
    4. The transcriptional diversity of 25 Drosophila cell lines. Cherbas L, et al. Genome Res, 2011 Feb. PMID 21177962, Free PMC Article
    5. The impact of genome variation and diet on the metabolic phenotype and microbiome composition of Drosophila melanogaster. Jehrke L, et al. Sci Rep, 2018 Apr 18. PMID 29670218, Free PMC Article

    See all (26) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables cytoskeletal anchor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG3104-PA
    CG3104-PB
    CG3104-PC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      2848989..2855778 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_134880.2 → NP_608724.1  uncharacterized protein Dmel_CG3104, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_608724.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VQI1
      Related
      FBpp0077370
      Conserved Domains (3) summary
      cd00204
      Location:37 → 162
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:47 → 137
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:42 → 73
      ANK; ANK repeat [structural motif]

    2. NM_164505.2 → NP_722852.1  uncharacterized protein Dmel_CG3104, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_722852.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VQI1
      Related
      FBpp0077371
      Conserved Domains (3) summary
      cd00204
      Location:37 → 162
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:47 → 137
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:42 → 73
      ANK; ANK repeat [structural motif]

    3. NM_001273040.1 → NP_001259969.1  uncharacterized protein Dmel_CG3104, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001259969.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VQI1
      Conserved Domains (3) summary
      cd00204
      Location:37 → 162
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:47 → 137
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:42 → 73
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VQI1 Q9VQI1

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