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    C15h14orf93 similar to human chromosome 14 open reading frame 93 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498514, updated on 5-Mar-2024

    Summary

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    Official Symbol
    C15h14orf93provided by RGD
    Official Full Name
    similar to human chromosome 14 open reading frame 93provided by RGD
    Primary source
    RGD:1565222
    See related
    Ensembl:ENSRNOG00000013317 AllianceGenome:RGD:1565222
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1565222
    Summary
    Predicted to act upstream of or within anatomical structure development; cell differentiation; and positive regulation of gene expression. Orthologous to human C14orf93 (chromosome 14 open reading frame 93). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Kidney (RPKM 39.3), Thymus (RPKM 31.9) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    15p13
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 15 NC_086033.1 (32007591..32034337, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 15 NC_051350.1 (28037567..28064347, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (33225172..33250609, complement)

    Chromosome 15 - NC_086033.1Genomic Context describing neighboring genes Neighboring gene HAUS augmin-like complex, subunit 4 Neighboring gene ajuba LIM protein Neighboring gene transfer RNA alanine (anticodon AGC) 93 Neighboring gene proteasome 20S subunit beta 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Rtfc (4931414P19Rik) Regulates in vitro Thyroid Differentiation and in vivo Thyroid Function. Yu Y, et al. Sci Rep, 2017 Feb 23. PMID 28230092, Free PMC Article
    2. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Castello A, et al. Cell, 2012 Jun 8. PMID 22658674

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    acts_upstream_of_or_within cell differentiation ISO
    Inferred from Sequence Orthology
    more info
    		  
    acts_upstream_of_or_within positive regulation of gene expression ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C14orf93 homolog

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109101.1 → NP_001102571.1  uncharacterized protein C14orf93 homolog

      See identical proteins and their annotated locations for NP_001102571.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474049
      UniProtKB/TrEMBL
      A6KGV0, D4AB71
      Related
      ENSRNOP00000017857.3, ENSRNOT00000017857.7
      Conserved Domains (1) summary
      pfam15394
      Location:2 → 539
      DUF4616; Domain of unknown function (DUF4616)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086033.1 Reference GRCr8

      Range
      32007591..32034337 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006252005.5 → XP_006252067.1  uncharacterized protein C14orf93 homolog isoform X1

      See identical proteins and their annotated locations for XP_006252067.1

      UniProtKB/TrEMBL
      A6KGV0, D4AB71
      Conserved Domains (1) summary
      pfam15394
      Location:2 → 539
      DUF4616; Domain of unknown function (DUF4616)

    2. XM_039093590.2 → XP_038949518.1  uncharacterized protein C14orf93 homolog isoform X1

      UniProtKB/TrEMBL
      A6KGV0, D4AB71
      Conserved Domains (1) summary
      pfam15394
      Location:2 → 539
      DUF4616; Domain of unknown function (DUF4616)

    3. XM_006252004.5 → XP_006252066.1  uncharacterized protein C14orf93 homolog isoform X1

      See identical proteins and their annotated locations for XP_006252066.1

      UniProtKB/TrEMBL
      A6KGV0, D4AB71
      Conserved Domains (1) summary
      pfam15394
      Location:2 → 539
      DUF4616; Domain of unknown function (DUF4616)

    4. XM_039093591.2 → XP_038949519.1  uncharacterized protein C14orf93 homolog isoform X1

      UniProtKB/TrEMBL
      A6KGV0, D4AB71
      Conserved Domains (1) summary
      pfam15394
      Location:2 → 539
      DUF4616; Domain of unknown function (DUF4616)
    Nucleotide Protein Strain
    Heading Accession and Version

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