U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Ccdc91 coiled-coil domain containing 91 [ Mus musculus (house mouse) ]

    Gene ID: 67015, updated on 30-Apr-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Ccdc91provided by MGI
    Official Full Name
    coiled-coil domain containing 91provided by MGI
    Primary source
    MGI:MGI:1914265
    See related
    Ensembl:ENSMUSG00000030301 AllianceGenome:MGI:1914265
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    p56; 1700086G08Rik; 1810060J02Rik
    Summary
    Enables identical protein binding activity. Predicted to be involved in Golgi to lysosome transport. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi apparatus and nucleoplasm. Predicted to be active in trans-Golgi network. Is expressed in central nervous system; genitourinary system; retina; and vibrissa. Orthologous to human CCDC91 (coiled-coil domain containing 91). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in testis adult (RPKM 109.4), adrenal adult (RPKM 9.3) and 11 other tissues See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    6 G3; 6 78.22 cM
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (147377322..147534110)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (147475871..147632613)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene parathyroid hormone-like peptide Neighboring gene ribosomal protein L5 pseudogene Neighboring gene STARR-seq mESC enhancer starr_17824 Neighboring gene STARR-positive B cell enhancer ABC_E3693 Neighboring gene predicted gene 6288 Neighboring gene predicted gene, 36244 Neighboring gene RIKEN cDNA 1700049E15 gene Neighboring gene predicted gene 15762

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Analysis of Gga null mice demonstrates a non-redundant role for mammalian GGA2 during development. Govero J, et al. PLoS One, 2012. PMID 22291915, Free PMC Article
    2. Three-dimensional visualization of testis cord morphogenesis, a novel tubulogenic mechanism in development. Combes AN, et al. Dev Dyn, 2009 May. PMID 19334288, Free PMC Article
    3. Protein-protein interaction panel using mouse full-length cDNAs. Suzuki H, et al. Genome Res, 2001 Oct. PMID 11591653, Free PMC Article
    4. Irisin Mediates Effects on Bone and Fat via αV Integrin Receptors. Kim H, et al. Cell, 2018 Dec 13. PMID 30550785, Free PMC Article
    5. GUDMAP: the genitourinary developmental molecular anatomy project. McMahon AP, et al. J Am Soc Nephrol, 2008 Apr. PMID 18287559

    See all (23) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in Golgi to lysosome transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in Golgi to lysosome transport ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in Golgi vesicle transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in trans-Golgi network IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in trans-Golgi network ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    coiled-coil domain-containing protein 91
    Names
    GGA-binding partner

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001355713.1 → NP_001342642.1  coiled-coil domain-containing protein 91 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC132614, AC152952, BC049073
      Consensus CDS
      CCDS20707.1
      UniProtKB/Swiss-Prot
      Q8R3N8, Q9D8L5, Q9D9E8
      UniProtKB/TrEMBL
      Q0P6I6
      Conserved Domains (1) summary
      pfam17380
      Location:130 → 442
      DUF5401; Family of unknown function (DUF5401)

    2. NM_001355714.1 → NP_001342643.1  coiled-coil domain-containing protein 91 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC132614, AC152952, BC049073
      UniProtKB/TrEMBL
      Q0P6I6
      Conserved Domains (1) summary
      pfam17380
      Location:100 → 412
      DUF5401; Family of unknown function (DUF5401)

    3. NM_001355715.1 → NP_001342644.1  coiled-coil domain-containing protein 91 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC132614, AC152952, BC049073
      UniProtKB/TrEMBL
      Q0P6I6
      Conserved Domains (1) summary
      pfam17380
      Location:100 → 412
      DUF5401; Family of unknown function (DUF5401)

    4. NM_025911.2 → NP_080187.2  coiled-coil domain-containing protein 91 isoform 1

      See identical proteins and their annotated locations for NP_080187.2

      Status: VALIDATED

      Source sequence(s)
      AK007017, AK007917, CO038888
      Consensus CDS
      CCDS20707.1
      UniProtKB/Swiss-Prot
      Q8R3N8, Q9D8L5, Q9D9E8
      UniProtKB/TrEMBL
      Q0P6I6
      Related
      ENSMUSP00000032441.7, ENSMUST00000032441.14
      Conserved Domains (1) summary
      pfam17380
      Location:130 → 442
      DUF5401; Family of unknown function (DUF5401)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      147377322..147534110
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036152268.1 → XP_036008161.1  coiled-coil domain-containing protein 91 isoform X2

      UniProtKB/TrEMBL
      Q0P6I6
      Conserved Domains (1) summary
      pfam17380
      Location:100 → 412
      DUF5401; Family of unknown function (DUF5401)

    2. XM_036152266.1 → XP_036008159.1  coiled-coil domain-containing protein 91 isoform X1

      UniProtKB/Swiss-Prot
      Q8R3N8, Q9D8L5, Q9D9E8
      UniProtKB/TrEMBL
      Q0P6I6
      Conserved Domains (1) summary
      pfam17380
      Location:130 → 442
      DUF5401; Family of unknown function (DUF5401)

    3. XM_006507076.3 → XP_006507139.1  coiled-coil domain-containing protein 91 isoform X1

      See identical proteins and their annotated locations for XP_006507139.1

      UniProtKB/Swiss-Prot
      Q8R3N8, Q9D8L5, Q9D9E8
      UniProtKB/TrEMBL
      Q0P6I6
      Conserved Domains (1) summary
      pfam17380
      Location:130 → 442
      DUF5401; Family of unknown function (DUF5401)

    4. XM_036152267.1 → XP_036008160.1  coiled-coil domain-containing protein 91 isoform X1

      UniProtKB/Swiss-Prot
      Q8R3N8, Q9D8L5, Q9D9E8
      UniProtKB/TrEMBL
      Q0P6I6
      Conserved Domains (1) summary
      pfam17380
      Location:130 → 442
      DUF5401; Family of unknown function (DUF5401)

    5. XM_030255551.2 → XP_030111411.1  coiled-coil domain-containing protein 91 isoform X2

      UniProtKB/TrEMBL
      Q0P6I6
      Conserved Domains (1) summary
      pfam17380
      Location:100 → 412
      DUF5401; Family of unknown function (DUF5401)

    6. XM_006507078.4 → XP_006507141.1  coiled-coil domain-containing protein 91 isoform X2

      See identical proteins and their annotated locations for XP_006507141.1

      UniProtKB/TrEMBL
      Q0P6I6
      Conserved Domains (1) summary
      pfam17380
      Location:100 → 412
      DUF5401; Family of unknown function (DUF5401)

    7. XM_006507080.4 → XP_006507143.1  coiled-coil domain-containing protein 91 isoform X2

      See identical proteins and their annotated locations for XP_006507143.1

      UniProtKB/TrEMBL
      Q0P6I6
      Conserved Domains (1) summary
      pfam17380
      Location:100 → 412
      DUF5401; Family of unknown function (DUF5401)

    8. XM_006507079.5 → XP_006507142.1  coiled-coil domain-containing protein 91 isoform X2

      See identical proteins and their annotated locations for XP_006507142.1

      UniProtKB/TrEMBL
      Q0P6I6
      Conserved Domains (1) summary
      pfam17380
      Location:100 → 412
      DUF5401; Family of unknown function (DUF5401)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9D8L5.2 GenPept UniProtKB/Swiss-Prot:Q9D8L5

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous