U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LINC02493 long intergenic non-protein coding RNA 2493 [ Homo sapiens (human) ]

    Gene ID: 101929123, updated on 10-Oct-2023

    Summary

    Official Symbol
    LINC02493provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2493provided by HGNC
    Primary source
    HGNC:HGNC:53477
    See related
    Ensembl:ENSG00000250819 AllianceGenome:HGNC:53477
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    4p15.32
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (17171757..17186057, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (17153714..17168047, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (17173380..17187680, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374507 Neighboring gene MT-ND5 pseudogene 4 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:17089199-17089385 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21348 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:17164733-17165234 Neighboring gene uncharacterized LOC107986219 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:17286136-17286636 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:17286637-17287137 Neighboring gene small nucleolar RNA, H/ACA box 75B

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125919.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC006231
      Related
      ENST00000509964.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      17171757..17186057 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      17153714..17168047 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)