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    ADGRL1 adhesion G protein-coupled receptor L1 [ Homo sapiens (human) ]

    Gene ID: 22859, updated on 2-May-2024

    Summary

    Official Symbol
    ADGRL1provided by HGNC
    Official Full Name
    adhesion G protein-coupled receptor L1provided by HGNC
    Primary source
    HGNC:HGNC:20973
    See related
    Ensembl:ENSG00000072071 MIM:616416; AllianceGenome:HGNC:20973
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CL1; LEC2; CIRL1; LPHN1; DEDBANP
    Summary
    This gene encodes a member of the latrophilin subfamily of G-protein coupled receptors (GPCR). Latrophilins may function in both cell adhesion and signal transduction. In experiments with non-human species, endogenous proteolytic cleavage within a cysteine-rich GPS (G-protein-coupled-receptor proteolysis site) domain resulted in two subunits (a large extracellular N-terminal cell adhesion subunit and a subunit with substantial similarity to the secretin/calcitonin family of GPCRs) being non-covalently bound at the cell membrane. Latrophilin-1 has been shown to recruit the neurotoxin from black widow spider venom, alpha-latrotoxin, to the synapse plasma membrane. Alternative splicing results in multiple variants encoding distinct isoforms.[provided by RefSeq, Oct 2008]
    Expression
    Broad expression in brain (RPKM 19.5), fat (RPKM 7.9) and 22 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    19p13.12
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (14147743..14206169, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (14274383..14332836, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (14258555..14316981, complement)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:14223743-14224430 Neighboring gene protein kinase cAMP-activated catalytic subunit alpha Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10233 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10234 Neighboring gene uncharacterized LOC124904642 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14155 Neighboring gene small integral membrane protein 46 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10235 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14156 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:14247764-14248390 Neighboring gene Sharpr-MPRA regulatory region 12148 Neighboring gene ADGRL1 antisense RNA 1 Neighboring gene anti-silencing function 1B histone chaperone Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:14258690-14259433 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:14278263-14278762 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10237 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10238 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:14320437-14320936 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:14328052-14328362 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:14332061-14332584 Neighboring gene RNA, 7SL, cytoplasmic 231, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10240 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10241 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:14360564-14361081 Neighboring gene MPRA-validated peak3380 silencer Neighboring gene MPRA-validated peak3381 silencer Neighboring gene Sharpr-MPRA regulatory region 1520 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10242 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:14408885-14409384 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:14421820-14422074 Neighboring gene long intergenic non-protein coding RNA 1841 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:14429209-14429710 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:14429711-14430210 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:14444577-14445252 Neighboring gene MPRA-validated peak3382 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:14449292-14449792 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:14449793-14450293 Neighboring gene long intergenic non-protein coding RNA 1842

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables G protein-coupled receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables cell adhesion molecule binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables latrotoxin receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables latrotoxin receptor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in axon IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in axon ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in growth cone ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in membrane TAS
    Traceable Author Statement
    more info
    PubMed 
    located_in neuron projection ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    is_active_in presynaptic membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in presynaptic membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in synapse ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    adhesion G protein-coupled receptor L1
    Names
    CIRL-1
    calcium-independent alpha-latrotoxin receptor 1
    latrophilin-1
    lectomedin-2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001008701.3NP_001008701.1  adhesion G protein-coupled receptor L1 isoform 1 precursor

      See identical proteins and their annotated locations for NP_001008701.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AB020628, AF307079, BC002974, BC072445
      Consensus CDS
      CCDS32928.1
      UniProtKB/Swiss-Prot
      O94910, Q96IE7, Q9BU07, Q9HAR3
      Related
      ENSP00000340688.5, ENST00000340736.10
      Conserved Domains (8) summary
      smart00303
      Location:798850
      GPS; G-protein-coupled receptor proteolytic site domain
      smart00008
      Location:476539
      HormR; Domain present in hormone receptors
      PHA03247
      Location:398482
      PHA03247; large tegument protein UL36; Provisional
      cd16007
      Location:8571114
      7tmB2_Latrophilin-1; Latrophilin-1, member of the class B2 family of seven-transmembrane G protein-coupled receptors
      pfam02140
      Location:48128
      Gal_Lectin; Galactose binding lectin domain
      pfam02354
      Location:11131474
      Latrophilin; Latrophilin Cytoplasmic C-terminal region
      pfam16489
      Location:549774
      GAIN; GPCR-Autoproteolysis INducing (GAIN) domain
      cl02549
      Location:142398
      OLF; Olfactomedin-like domain
    2. NM_014921.5NP_055736.2  adhesion G protein-coupled receptor L1 isoform 2 precursor

      See identical proteins and their annotated locations for NP_055736.2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) lacks an alternate in-frame exon, compared to variant 1, resulting in a shorter protein (isoform 2) compared to isoform 1.
      Source sequence(s)
      AB020628, AF307079, BC002974, BC072445
      Consensus CDS
      CCDS12307.1
      UniProtKB/Swiss-Prot
      O94910
      Related
      ENSP00000355328.2, ENST00000361434.8
      Conserved Domains (8) summary
      smart00303
      Location:793845
      GPS; G-protein-coupled receptor proteolytic site domain
      smart00008
      Location:471534
      HormR; Domain present in hormone receptors
      PHA03247
      Location:393465
      PHA03247; large tegument protein UL36; Provisional
      cd16007
      Location:8521109
      7tmB2_Latrophilin-1; Latrophilin-1, member of the class B2 family of seven-transmembrane G protein-coupled receptors
      pfam02140
      Location:48128
      Gal_Lectin; Galactose binding lectin domain
      pfam02354
      Location:11081469
      Latrophilin; Latrophilin Cytoplasmic C-terminal region
      pfam16489
      Location:544769
      GAIN; GPCR-Autoproteolysis INducing (GAIN) domain
      cl02549
      Location:137393
      OLF; Olfactomedin-like domain

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

      Range
      14147743..14206169 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047438418.1XP_047294374.1  adhesion G protein-coupled receptor L1 isoform X9

    2. XM_005259818.4XP_005259875.1  adhesion G protein-coupled receptor L1 isoform X5

      See identical proteins and their annotated locations for XP_005259875.1

      Conserved Domains (8) summary
      smart00303
      Location:793845
      GPS; G-protein-coupled receptor proteolytic site domain
      smart00008
      Location:471534
      HormR; Domain present in hormone receptors
      PHA03247
      Location:393465
      PHA03247; large tegument protein UL36; Provisional
      cd16007
      Location:8521109
      7tmB2_Latrophilin-1; Latrophilin-1, member of the class B2 family of seven-transmembrane G protein-coupled receptors
      pfam02140
      Location:48128
      Gal_Lectin; Galactose binding lectin domain
      pfam02354
      Location:11081493
      Latrophilin; Latrophilin Cytoplasmic C-terminal region
      pfam16489
      Location:544769
      GAIN; GPCR-Autoproteolysis INducing (GAIN) domain
      cl02549
      Location:137393
      OLF; Olfactomedin-like domain
    3. XM_011527798.3XP_011526100.1  adhesion G protein-coupled receptor L1 isoform X3

      See identical proteins and their annotated locations for XP_011526100.1

      Conserved Domains (8) summary
      smart00303
      Location:800852
      GPS; G-protein-coupled receptor proteolytic site domain
      smart00008
      Location:478541
      HormR; Domain present in hormone receptors
      PHA03247
      Location:393497
      PHA03247; large tegument protein UL36; Provisional
      cd16007
      Location:8591116
      7tmB2_Latrophilin-1; Latrophilin-1, member of the class B2 family of seven-transmembrane G protein-coupled receptors
      pfam02140
      Location:48128
      Gal_Lectin; Galactose binding lectin domain
      pfam02354
      Location:11151500
      Latrophilin; Latrophilin Cytoplasmic C-terminal region
      pfam16489
      Location:551776
      GAIN; GPCR-Autoproteolysis INducing (GAIN) domain
      cl02549
      Location:137393
      OLF; Olfactomedin-like domain
    4. XM_011527796.3XP_011526098.1  adhesion G protein-coupled receptor L1 isoform X2

      See identical proteins and their annotated locations for XP_011526098.1

      Conserved Domains (8) summary
      smart00303
      Location:805857
      GPS; G-protein-coupled receptor proteolytic site domain
      smart00008
      Location:483546
      HormR; Domain present in hormone receptors
      PHA03247
      Location:398502
      PHA03247; large tegument protein UL36; Provisional
      cd16007
      Location:8641121
      7tmB2_Latrophilin-1; Latrophilin-1, member of the class B2 family of seven-transmembrane G protein-coupled receptors
      pfam02140
      Location:48128
      Gal_Lectin; Galactose binding lectin domain
      pfam02354
      Location:11201505
      Latrophilin; Latrophilin Cytoplasmic C-terminal region
      pfam16489
      Location:556781
      GAIN; GPCR-Autoproteolysis INducing (GAIN) domain
      cl02549
      Location:142398
      OLF; Olfactomedin-like domain
    5. XM_047438417.1XP_047294373.1  adhesion G protein-coupled receptor L1 isoform X8

    6. XM_017026477.2XP_016881966.1  adhesion G protein-coupled receptor L1 isoform X4

      Conserved Domains (8) summary
      smart00303
      Location:799851
      GPS; G-protein-coupled receptor proteolytic site domain
      smart00008
      Location:477540
      HormR; Domain present in hormone receptors
      PHA03247
      Location:399471
      PHA03247; large tegument protein UL36; Provisional
      cd16007
      Location:8581115
      7tmB2_Latrophilin-1; Latrophilin-1, member of the class B2 family of seven-transmembrane G protein-coupled receptors
      pfam02140
      Location:48128
      Gal_Lectin; Galactose binding lectin domain
      pfam02354
      Location:11141499
      Latrophilin; Latrophilin Cytoplasmic C-terminal region
      pfam16489
      Location:550775
      GAIN; GPCR-Autoproteolysis INducing (GAIN) domain
      cl02549
      Location:143399
      OLF; Olfactomedin-like domain
    7. XM_017026479.2XP_016881968.1  adhesion G protein-coupled receptor L1 isoform X7

    8. XM_017026478.2XP_016881967.1  adhesion G protein-coupled receptor L1 isoform X6

      Conserved Domains (8) summary
      smart00303
      Location:806858
      GPS; G-protein-coupled receptor proteolytic site domain
      smart00008
      Location:484547
      HormR; Domain present in hormone receptors
      PHA03247
      Location:399537
      PHA03247; large tegument protein UL36; Provisional
      cd16007
      Location:8651122
      7tmB2_Latrophilin-1; Latrophilin-1, member of the class B2 family of seven-transmembrane G protein-coupled receptors
      pfam02140
      Location:48128
      Gal_Lectin; Galactose binding lectin domain
      pfam02354
      Location:11211482
      Latrophilin; Latrophilin Cytoplasmic C-terminal region
      pfam16489
      Location:557782
      GAIN; GPCR-Autoproteolysis INducing (GAIN) domain
      cl02549
      Location:143399
      OLF; Olfactomedin-like domain
    9. XM_017026475.2XP_016881964.1  adhesion G protein-coupled receptor L1 isoform X1

      Conserved Domains (8) summary
      smart00303
      Location:806858
      GPS; G-protein-coupled receptor proteolytic site domain
      smart00008
      Location:484547
      HormR; Domain present in hormone receptors
      PHA03247
      Location:399503
      PHA03247; large tegument protein UL36; Provisional
      cd16007
      Location:8651122
      7tmB2_Latrophilin-1; Latrophilin-1, member of the class B2 family of seven-transmembrane G protein-coupled receptors
      pfam02140
      Location:48128
      Gal_Lectin; Galactose binding lectin domain
      pfam02354
      Location:11211506
      Latrophilin; Latrophilin Cytoplasmic C-terminal region
      pfam16489
      Location:557782
      GAIN; GPCR-Autoproteolysis INducing (GAIN) domain
      cl02549
      Location:143399
      OLF; Olfactomedin-like domain
    10. XM_047438415.1XP_047294371.1  adhesion G protein-coupled receptor L1 isoform X5

    11. XM_017026476.2XP_016881965.1  adhesion G protein-coupled receptor L1 isoform X1

      Conserved Domains (8) summary
      smart00303
      Location:806858
      GPS; G-protein-coupled receptor proteolytic site domain
      smart00008
      Location:484547
      HormR; Domain present in hormone receptors
      PHA03247
      Location:399503
      PHA03247; large tegument protein UL36; Provisional
      cd16007
      Location:8651122
      7tmB2_Latrophilin-1; Latrophilin-1, member of the class B2 family of seven-transmembrane G protein-coupled receptors
      pfam02140
      Location:48128
      Gal_Lectin; Galactose binding lectin domain
      pfam02354
      Location:11211506
      Latrophilin; Latrophilin Cytoplasmic C-terminal region
      pfam16489
      Location:557782
      GAIN; GPCR-Autoproteolysis INducing (GAIN) domain
      cl02549
      Location:143399
      OLF; Olfactomedin-like domain
    12. XM_047438416.1XP_047294372.1  adhesion G protein-coupled receptor L1 isoform X5

    13. XM_047438413.1XP_047294369.1  adhesion G protein-coupled receptor L1 isoform X1

    14. XM_047438414.1XP_047294370.1  adhesion G protein-coupled receptor L1 isoform X3

    15. XM_024451420.2XP_024307188.1  adhesion G protein-coupled receptor L1 isoform X1

      Conserved Domains (8) summary
      smart00303
      Location:806858
      GPS; G-protein-coupled receptor proteolytic site domain
      smart00008
      Location:484547
      HormR; Domain present in hormone receptors
      PHA03247
      Location:399503
      PHA03247; large tegument protein UL36; Provisional
      cd16007
      Location:8651122
      7tmB2_Latrophilin-1; Latrophilin-1, member of the class B2 family of seven-transmembrane G protein-coupled receptors
      pfam02140
      Location:48128
      Gal_Lectin; Galactose binding lectin domain
      pfam02354
      Location:11211506
      Latrophilin; Latrophilin Cytoplasmic C-terminal region
      pfam16489
      Location:557782
      GAIN; GPCR-Autoproteolysis INducing (GAIN) domain
      cl02549
      Location:143399
      OLF; Olfactomedin-like domain
    16. XM_047438419.1XP_047294375.1  adhesion G protein-coupled receptor L1 isoform X12

    17. XM_017026480.2XP_016881969.2  adhesion G protein-coupled receptor L1 isoform X11

    18. XM_011527801.3XP_011526103.2  adhesion G protein-coupled receptor L1 isoform X10

    19. XM_017026481.2XP_016881970.1  adhesion G protein-coupled receptor L1 isoform X13

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_021160022.1 Reference GRCh38.p14 PATCHES

      Range
      359902..418328 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054332684.1XP_054188659.1  adhesion G protein-coupled receptor L1 isoform X9

    2. XM_054332679.1XP_054188654.1  adhesion G protein-coupled receptor L1 isoform X5

    3. XM_054332675.1XP_054188650.1  adhesion G protein-coupled receptor L1 isoform X3

    4. XM_054332674.1XP_054188649.1  adhesion G protein-coupled receptor L1 isoform X2

    5. XM_054332683.1XP_054188658.1  adhesion G protein-coupled receptor L1 isoform X8

    6. XM_054332677.1XP_054188652.1  adhesion G protein-coupled receptor L1 isoform X4

    7. XM_054332682.1XP_054188657.1  adhesion G protein-coupled receptor L1 isoform X7

    8. XM_054332681.1XP_054188656.1  adhesion G protein-coupled receptor L1 isoform X6

    9. XM_054332670.1XP_054188645.1  adhesion G protein-coupled receptor L1 isoform X1

    10. XM_054332678.1XP_054188653.1  adhesion G protein-coupled receptor L1 isoform X5

    11. XM_054332672.1XP_054188647.1  adhesion G protein-coupled receptor L1 isoform X1

    12. XM_054332680.1XP_054188655.1  adhesion G protein-coupled receptor L1 isoform X5

    13. XM_054332673.1XP_054188648.1  adhesion G protein-coupled receptor L1 isoform X1

    14. XM_054332676.1XP_054188651.1  adhesion G protein-coupled receptor L1 isoform X3

    15. XM_054332671.1XP_054188646.1  adhesion G protein-coupled receptor L1 isoform X1

    16. XM_054332687.1XP_054188662.1  adhesion G protein-coupled receptor L1 isoform X12

    17. XM_054332686.1XP_054188661.1  adhesion G protein-coupled receptor L1 isoform X11

    18. XM_054332685.1XP_054188660.1  adhesion G protein-coupled receptor L1 isoform X10

    19. XM_054332688.1XP_054188663.1  adhesion G protein-coupled receptor L1 isoform X13

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060943.1 Alternate T2T-CHM13v2.0

      Range
      14274383..14332836 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054320219.1XP_054176194.1  adhesion G protein-coupled receptor L1 isoform X9

    2. XM_054320214.1XP_054176189.1  adhesion G protein-coupled receptor L1 isoform X5

    3. XM_054320210.1XP_054176185.1  adhesion G protein-coupled receptor L1 isoform X3

    4. XM_054320209.1XP_054176184.1  adhesion G protein-coupled receptor L1 isoform X2

    5. XM_054320218.1XP_054176193.1  adhesion G protein-coupled receptor L1 isoform X8

    6. XM_054320212.1XP_054176187.1  adhesion G protein-coupled receptor L1 isoform X4

    7. XM_054320217.1XP_054176192.1  adhesion G protein-coupled receptor L1 isoform X7

    8. XM_054320216.1XP_054176191.1  adhesion G protein-coupled receptor L1 isoform X6

    9. XM_054320205.1XP_054176180.1  adhesion G protein-coupled receptor L1 isoform X1

    10. XM_054320213.1XP_054176188.1  adhesion G protein-coupled receptor L1 isoform X5

    11. XM_054320207.1XP_054176182.1  adhesion G protein-coupled receptor L1 isoform X1

    12. XM_054320215.1XP_054176190.1  adhesion G protein-coupled receptor L1 isoform X5

    13. XM_054320208.1XP_054176183.1  adhesion G protein-coupled receptor L1 isoform X1

    14. XM_054320211.1XP_054176186.1  adhesion G protein-coupled receptor L1 isoform X3

    15. XM_054320206.1XP_054176181.1  adhesion G protein-coupled receptor L1 isoform X1

    16. XM_054320222.1XP_054176197.1  adhesion G protein-coupled receptor L1 isoform X12

    17. XM_054320221.1XP_054176196.1  adhesion G protein-coupled receptor L1 isoform X11

    18. XM_054320220.1XP_054176195.1  adhesion G protein-coupled receptor L1 isoform X10

    19. XM_054320223.1XP_054176198.1  adhesion G protein-coupled receptor L1 isoform X13