Trappc10 trafficking protein particle complex subunit 10 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Trappc10provided by RGD
Official Full Name: trafficking protein particle complex subunit 10provided by RGD
Primary source: RGD:1311263
See related: Ensembl:ENSRNOG00000023210 AllianceGenome:RGD:1311263
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Tmem1
Summary: Predicted to be involved in early endosome to Golgi transport and intra-Golgi vesicle-mediated transport. Predicted to be located in cytosol. Predicted to be part of TRAPPII protein complex. Orthologous to human TRAPPC10 (trafficking protein particle complex subunit 10). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Brain (RPKM 124.5), Adrenal (RPKM 120.7) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 20p12

Exon count:: 23

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	20	NC_086038.1 (10438404..10498740)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	20	NC_051355.1 (10438737..10499074)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	20	NC_005119.4 (11168298..11228634)

Chromosome 20 - NC_086038.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

BE120517 (e-PCR)
- UniSTS:247349

UniSTS:259664 (e-PCR)
- UniSTS:259664

Tmem1 (e-PCR), detects polymorphism
- UniSTS:259664

RH141836 (e-PCR)
- UniSTS:223828

Tmem1 (e-PCR), detects polymorphism
- UniSTS:259158

Gene Ontology Provided by RGD

Process	Evidence Code	Pubs
involved_in early endosome to Golgi transport	IBA Inferred from Biological aspect of Ancestor more info
involved_in intra-Golgi vesicle-mediated transport	IBA Inferred from Biological aspect of Ancestor more info
involved_in intra-Golgi vesicle-mediated transport	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
part_of TRAPP complex	ISO Inferred from Sequence Orthology more info
part_of TRAPPII protein complex	IBA Inferred from Biological aspect of Ancestor more info
located_in cytosol	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: trafficking protein particle complex subunit 10

Names: trafficking protein particle complex 10; transmembrane protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001173528.1 → NP_001166999.1 trafficking protein particle complex subunit 10

Status: VALIDATED

Source sequence(s)

JAXUCZ010000020

UniProtKB/TrEMBL

A0A8I6GJ45, F1MAQ4

Related

ENSRNOP00000030074.3, ENSRNOT00000032240.5

Conserved Domains (2) summary

pfam11817
Location:459 → 548

Foie-gras_1; Foie gras liver health family 1

pfam12584
Location:1018 → 1246

TRAPPC10; Trafficking protein particle complex subunit 10, TRAPPC10