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    SMIM43 small integral membrane protein 43 [ Homo sapiens (human) ]

    Gene ID: 132332, updated on 5-Mar-2024

    Summary

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    Official Symbol
    SMIM43provided by HGNC
    Official Full Name
    small integral membrane protein 43provided by HGNC
    Primary source
    HGNC:HGNC:55077
    See related
    Ensembl:ENSG00000164112 AllianceGenome:HGNC:55077
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    NEMEP; TMEM155
    Summary
    Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in brain (RPKM 10.6), placenta (RPKM 2.0) and 1 other tissue See more
    Orthologs
    mouse all
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    Genomic context

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    Location:
    4q27
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (121758930..121765400, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (125062956..125069427, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (122680085..122686555, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377402 Neighboring gene annexin A5 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:122611545-122612744 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15659 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:122633152-122634351 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15660 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:122669697-122670300 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:122670301-122670904 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_72694 Neighboring gene uncharacterized LOC100192379 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21868 Neighboring gene Sharpr-MPRA regulatory region 4891 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:122721667-122722470 Neighboring gene exosome component 9 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21870 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21871 Neighboring gene cyclin A2 Neighboring gene Bardet-Biedl syndrome 7 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21872

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. Hillier LW, et al. Nature, 2005 Apr 7. PMID 15815621
    2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    3. The BioPlex Network: A Systematic Exploration of the Human Interactome. Huttlin EL, et al. Cell, 2015 Jul 16. PMID 26186194, Free PMC Article
    4. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    5. Architecture of the human interactome defines protein communities and disease networks. Huttlin EL, et al. Nature, 2017 May 25. PMID 28514442, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • FLJ30834

    General protein information

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    Preferred Names
    small integral membrane protein 43
    Names
    Nodal Enhanced MEsendoderm Peptide
    protein TMEM155
    transmembrane protein 155

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001384332.1 → NP_001371261.1  small integral membrane protein 43

      Status: VALIDATED

      Source sequence(s)
      AC079341
      Consensus CDS
      CCDS93616.1
      UniProtKB/Swiss-Prot
      A0A2R8YEN4, D3DNW9, Q4W5P6, Q96NI2
      Related
      ENSP00000495721.1, ENST00000643802.2

    2. NM_001384333.1 → NP_001371262.1  small integral membrane protein 43

      Status: VALIDATED

      Source sequence(s)
      AC079341
      Consensus CDS
      CCDS93616.1
      UniProtKB/Swiss-Prot
      A0A2R8YEN4, D3DNW9, Q4W5P6, Q96NI2

    3. NM_001384334.1 → NP_001371263.1  small integral membrane protein 43

      Status: VALIDATED

      Source sequence(s)
      AC079341
      Consensus CDS
      CCDS93616.1
      UniProtKB/Swiss-Prot
      A0A2R8YEN4, D3DNW9, Q4W5P6, Q96NI2
      Related
      ENST00000461198.5

    RNA

    1. NR_169194.3 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC079341
      Related
      ENST00000394396.5

    2. NR_169195.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC079341

    3. NR_169196.3 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC079341

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      121758930..121765400 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      125062956..125069427 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054348898.1 → XP_054204873.1  small integral membrane protein 43 isoform X1

      UniProtKB/Swiss-Prot
      A0A2R8YEN4, D3DNW9, Q4W5P6, Q96NI2

    2. XM_054348897.1 → XP_054204872.1  small integral membrane protein 43 isoform X1

      UniProtKB/Swiss-Prot
      A0A2R8YEN4, D3DNW9, Q4W5P6, Q96NI2

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001317837.2: Suppressed sequence

      Description
      NM_001317837.2: This RefSeq was removed because currently there is support for the transcript but not for the protein.

    2. NM_001317838.2: Suppressed sequence

      Description
      NM_001317838.2: This RefSeq was removed because currently there is support for the transcript but not for the protein.

    3. NM_001317839.2: Suppressed sequence

      Description
      NM_001317839.2: This RefSeq was removed because currently there is support for the transcript but not for the protein.

    4. NM_001317841.2: Suppressed sequence

      Description
      NM_001317841.2: This RefSeq was removed because currently there is support for the transcript but not for the protein.

    5. NM_001317842.2: Suppressed sequence

      Description
      NM_001317842.2: This RefSeq was removed because currently there is support for the transcript but not for the protein.

    6. NM_001369019.1: Suppressed sequence

      Description
      NM_001369019.1: This RefSeq was removed because currently there is support for the transcript but not for the protein.

    7. NM_152399.4: Suppressed sequence

      Description
      NM_152399.4: This RefSeq was removed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein
    Heading Accession and Version

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