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    LINC02243 long intergenic non-protein coding RNA 2243 [ Homo sapiens (human) ]

    Gene ID: 340581, updated on 10-Oct-2023

    Summary

    Official Symbol
    LINC02243provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2243provided by HGNC
    Primary source
    HGNC:HGNC:53129
    See related
    Ensembl:ENSG00000236091 AllianceGenome:HGNC:53129
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    Location:
    Xq26.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (134949549..134953382)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (133274653..133278481)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (134083579..134087412)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene motile sperm domain containing 1 Neighboring gene Sharpr-MPRA regulatory region 6850 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 21016 Neighboring gene RNA, U6 small nuclear 616, pseudogene Neighboring gene MPRA-validated peak7431 silencer Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:134094543-134095344 Neighboring gene high mobility group box 3 pseudogene 31 Neighboring gene CRISPRi-validated cis-regulatory element chrX.2259 Neighboring gene small integral membrane protein 10

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_134925.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC041423, Z83826
      Related
      ENST00000441841.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

      Range
      134949549..134953382
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060947.1 Alternate T2T-CHM13v2.0

      Range
      133274653..133278481
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)