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    LOC101929269 uncharacterized LOC101929269 [ Homo sapiens (human) ]

    Gene ID: 101929269, updated on 8-Nov-2023

    Summary

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    Gene symbol
    LOC101929269
    Gene description
    uncharacterized LOC101929269
    See related
    Ensembl:ENSG00000254839
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    8p23.1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (11062652..11067089, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (8671926..8676363)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (10920162..10924599, complement)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101929248 Neighboring gene uncharacterized LOC112268022 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26997 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:10785877-10786571 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:10795001-10795652 Neighboring gene XK related 6 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:10818763-10819262 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:10828786-10829181 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:10833945-10834446 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:10865365-10866070 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18917 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18918 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18919 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18920 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:10917857-10918374 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:10926551-10927368 Neighboring gene microRNA 598 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:10930301-10930846 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:10938390-10939589 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18921 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26998 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26999 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:10996613-10997114 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18922 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27000 Neighboring gene ribosomal protein L17 pseudogene 29 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27001 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18923 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18924 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18925 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27002 Neighboring gene long intergenic non-protein coding RNA 529 Neighboring gene ribosomal protein L19 pseudogene 13

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Clone Names

    • AF131215.6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_134308.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC038544
      Related
      ENST00000532453.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      11062652..11067089 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_018654717.1 Reference GRCh38.p14 PATCHES

      Range
      2279931..2284374
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      8671926..8676363
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases