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    YTHDF3-DT YTHDF3 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 101410533, updated on 10-Oct-2023

    Summary

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    Official Symbol
    YTHDF3-DTprovided by HGNC
    Official Full Name
    YTHDF3 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:48728
    See related
    Ensembl:ENSG00000270673 AllianceGenome:HGNC:48728
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    YTHDF3-AS1
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    Genomic context

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    Location:
    8q12.3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (63167725..63168442, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (63592890..63593607, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (64080284..64081001, complement)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene alpha tocopherol transfer protein Neighboring gene TARDBP pseudogene 4 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:64059469-64059969 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27450 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27451 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19241 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:64091666-64092563 Neighboring gene YTH N6-methyladenosine RNA binding protein F3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27452 Neighboring gene RNA, 7SL, cytoplasmic 135, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Other Names

    • YTHDF3 antisense RNA 1 (head to head)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_102684.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BM681776, BM967225, BQ631682
      Related
      ENST00000603538.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      63167725..63168442 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      63592890..63593607 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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