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    LOC101927060 uncharacterized LOC101927060 [ Homo sapiens (human) ]

    Gene ID: 101927060, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC101927060
    Gene description
    uncharacterized LOC101927060
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in testis (RPKM 3.5), thyroid (RPKM 1.8) and 23 other tissues See more
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    Genomic context

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    Location:
    17q21.32
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (46982786..47100285, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (47844227..47961760, complement)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 37 member A2 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr17:45054724-45055404 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:45055405-45056084 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8620 Neighboring gene golgi SNAP receptor complex member 2 Neighboring gene Sharpr-MPRA regulatory region 6393 Neighboring gene microRNA 5089 Neighboring gene leucine rich repeat containing 37 member A17, pseudogene Neighboring gene reprimo like Neighboring gene MPRA-validated peak2870 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:45145515-45146016 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:45146017-45146516 Neighboring gene uncharacterized LOC124904015 Neighboring gene RNA, 7SL, cytoplasmic 270, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:45175453-45176078 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8621 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr17:45197166-45197776 Neighboring gene protein GVQW1-like Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr17:45213296-45214495 Neighboring gene cell division cycle 27 Neighboring gene ribosomal protein S2 pseudogene 47

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      46982786..47100285 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007065805.1 RNA Sequence

    2. XR_243711.6 RNA Sequence

    3. XR_007065812.1 RNA Sequence

    4. XR_007065793.1 RNA Sequence

    5. XR_007065796.1 RNA Sequence

    6. XR_007065804.1 RNA Sequence

    7. XR_007065806.1 RNA Sequence

    8. XR_007065801.1 RNA Sequence

    9. XR_007065792.1 RNA Sequence

    10. XR_007065808.1 RNA Sequence

    11. XR_001753124.3 RNA Sequence

    12. XR_007065810.1 RNA Sequence

    13. XR_007065809.1 RNA Sequence

    14. XR_007065803.1 RNA Sequence

    15. XR_007065789.1 RNA Sequence

    16. XR_007065787.1 RNA Sequence

    17. XR_007065784.1 RNA Sequence

    18. XR_007065782.1 RNA Sequence

    19. XR_007065783.1 RNA Sequence

    20. XR_007065780.1 RNA Sequence

    21. XR_007065777.1 RNA Sequence

    22. XR_007065781.1 RNA Sequence

    23. XR_007065786.1 RNA Sequence

    24. XR_002958111.2 RNA Sequence

    25. XR_007065776.1 RNA Sequence

    26. XR_007065778.1 RNA Sequence

    27. XR_001753104.3 RNA Sequence

    28. XR_007065794.1 RNA Sequence

    29. XR_007065800.1 RNA Sequence

    30. XR_007065795.1 RNA Sequence

    31. XR_007065799.1 RNA Sequence

    32. XR_007065798.1 RNA Sequence

    33. XR_007065811.1 RNA Sequence

    34. XR_007065788.1 RNA Sequence

    35. XR_007065790.1 RNA Sequence

    36. XR_001753117.2 RNA Sequence

    37. XR_001753120.2 RNA Sequence

    38. XR_007065802.1 RNA Sequence

    39. XR_007065791.1 RNA Sequence

    40. XR_007065807.1 RNA Sequence

    41. XR_002958113.2 RNA Sequence

    42. XR_002958110.2 RNA Sequence

    43. XR_007065785.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      47844227..47961760 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007087558.1 RNA Sequence

    2. XR_007087548.1 RNA Sequence

    3. XR_007087559.1 RNA Sequence

    4. XR_007087570.1 RNA Sequence

    5. XR_007087545.1 RNA Sequence

    6. XR_007087557.1 RNA Sequence

    7. XR_007087564.1 RNA Sequence

    8. XR_007087562.1 RNA Sequence

    9. XR_007087542.1 RNA Sequence

    10. XR_007087547.1 RNA Sequence

    11. XR_007087561.1 RNA Sequence

    12. XR_007087551.1 RNA Sequence

    13. XR_007087544.1 RNA Sequence

    14. XR_007087539.1 RNA Sequence

    15. XR_007087550.1 RNA Sequence

    16. XR_007087534.1 RNA Sequence

    17. XR_007087565.1 RNA Sequence

    18. XR_007087563.1 RNA Sequence

    19. XR_007087541.1 RNA Sequence

    20. XR_007087532.1 RNA Sequence

    21. XR_007087529.1 RNA Sequence

    22. XR_007087527.1 RNA Sequence

    23. XR_007087528.1 RNA Sequence

    24. XR_007087526.1 RNA Sequence

    25. XR_007087523.1 RNA Sequence

    26. XR_007087531.1 RNA Sequence

    27. XR_007087524.1 RNA Sequence

    28. XR_007087520.1 RNA Sequence

    29. XR_007087525.1 RNA Sequence

    30. XR_007087521.1 RNA Sequence

    31. XR_007087555.1 RNA Sequence

    32. XR_007087552.1 RNA Sequence

    33. XR_007087554.1 RNA Sequence

    34. XR_007087553.1 RNA Sequence

    35. XR_007087569.1 RNA Sequence

    36. XR_007087533.1 RNA Sequence

    37. XR_007087536.1 RNA Sequence

    38. XR_007087566.1 RNA Sequence

    39. XR_007087567.1 RNA Sequence

    40. XR_007087538.1 RNA Sequence

    41. XR_007087560.1 RNA Sequence

    42. XR_007087546.1 RNA Sequence

    43. XR_007087556.1 RNA Sequence

    44. XR_007087549.1 RNA Sequence

    45. XR_007087530.1 RNA Sequence

    46. XR_007087540.1 RNA Sequence

    47. XR_007087568.1 RNA Sequence

    48. XR_007087535.1 RNA Sequence

    49. XR_007087537.1 RNA Sequence

    Nucleotide Protein
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