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Submitted SNP(ss) Details: ss12724366           
Submitter
HandleEGP_SNPS
Submitter SNP IDCYP1B1-000837
RefSNP(rs#)rs162558
Submitted Batch IDCYP1B1-PDR90-100703
Submitted DateOct 08, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPOct 8 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize158
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12724366|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 GCAGGCGCGA CTGTGCGTGC GCAGCCGAGG GTGGTGGCGG CCGGCACCCC ACGCCAAGGG
 TGGTGGTGGC CGGCACCCCA CCCTCGGCCG CCGCCTCCGC GTGTCAGGTG CCGTGAGAAG
 CGCGGGAGGA GCGGCCGCAG GCAGCGCCCA GGGATATGAC TGGAGCCGAC TTTCCAGAAG
 CGGCGCACGC AAAGCCCAGC TCCGCACGCA AAGGGGAGGC GACAGCAGAA ACTTCAACCC
 GATAAAGTTC GCCGG
 R
 GCGCGGAGAT TCGCCTCCTC CTGCCACTCT CCGCCCCGCT CGGGTCCCGC CCCGCTAGCT
 CCCCCAGGCC CCCCCAGTCG CCCCAGCTTG GCTCCCCGCC CTGCGCCAAC GGCTTCCATC
 GCAGCCTGGG CGGCCCCGCG CCCACCAGCG GGCGGCGCCA CCTGGAGTGG CCTCTACGCG
 GGAAATCTCA GGGCCAGCTG CGCCCCAGGA GCCTTTGTGT GCCCAAGCAC TGTCGGGGCC
 CCGGGGCGGG GGAGC

  Submitted Frequency for ss12724366 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90158A=0.87341797
G=0.12658200
0.221 +/-0.056CYP1B1-PDR90-100703EGP_SNPS


  dbSNP summary of Genotypes for ss12724366 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90158158A=0.87341774
G=0.12658228A/A=0.77215189
A/G=0.20253165
G/G=0.02531646
Pr(chiSq=0.558,df=1)
=0.479		Genotype
Freq.

  Submitted individual genotype for ss12724366 back to top
There is no individual genotype data for ss12724366.

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