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Submitted SNP(ss) Details: ss13452460           
Submitter
HandleEGP_SNPS
Submitter SNP IDPPARD-080088
RefSNP(rs#)rs9658154
Submitted Batch IDPPARD-PDR90-102403
Submitted DateOct 24, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPOct 24 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize72
PopulationPDR90
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss13452460|allelePos=256|len=511|taxid=9606|alleles='G/T'|mol=Genomic
 TTGGCCAGGC TGGTCTCGAA ctcctgacct caggtgatcc acctgccttg gcctcccaaa
 gtgctaggat tacaggtgtg aaccactgtg cctgacccaa tttttgtagt tttaataggg
 acggggtttc accatgttgg ctaggctggt cttgaactcc tgacctcagg tgatccaccc
 acctcggcct cccaaagtgc tgggattaca ggcgtgagcc actgcgtcca gccCCAACAA
 AGAAGCTTTA GGACT
 K
 CTTTAGACAT TTAAAATAGT TGTGTttttt ttttgttttg ttttgtttta ttttgttttg
 ttttgttttg agatggagtt tcactcttgt tgtccaggct ggagtgtaat ggcgcgatct
 tggctgactg caacctccac ctcccgggtt caagcgattc ccctgcctca gcctcctgag
 tagctgggat tacaggggtg tgccactaca cccagctaat ttttctgtat ttttagtaga
 gacggggttt cacca

  Submitted Frequency for ss13452460 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR9072T=0.90277803
G=0.09722200
0.176 +/-0.080PPARD-PDR90-102403EGP_SNPS


  dbSNP summary of Genotypes for ss13452460 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR907272T=0.90277779
G=0.09722222T/T=0.80555558
G/T=0.19444445
Pr(chiSq=0.077,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss13452460 back to top
There is no individual genotype data for ss13452460.

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