Submitted SNP(ss) Details: ss15355860

Submitted SNP(ss) Details: ss15355860

Submitter
Handle	IIPGA-WEISS-MARTINEZ
Submitter SNP ID	IIPGA-IRAK2_17875
RefSNP(rs#)	rs2306696
Submitted Batch ID	2.16
Submitted Date	Nov 14, 2003
Publication Cited	N.D.
First entry to dbSNP	Nov 14 2003 12:00:00:000AM

Resource Links
GenBank Accession	NT_005927.15
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	METHOD-4
Ascertainment Samplesize	94
Population	N.D.

Allele
Observed Allele	T/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 3
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 AGGNGGTGGT TGGGGAGGAT GTCCTGGAAA AGCCCAGCTA GGGGCTAGTG TGGGGACCTG
 TCCTAGAGGG ACTGCCTCTC TGACTCTAAG CAGAGTTCTC
 Y
 CNGTCCCTTC CAGCCTCCTA CGTGATCACA GACCTGACCC AGCTGCGGAA GATCAAGTNC
 ATGGAGCGGG TGCAGGGTGT GAGCATCACG CGGGAGCTGC

Submitted Frequency for ss15355860

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
E-1 - EUROPE	6	T=0.83300000	C=0.16700000	0.278 +/-0.287	T/T=0.66700000 C/T=0.33300000 C/C=0.00000000	0.333	2.16	IIPGA-WEISS-MARTINEZ
D-0 - NORTH AMERICA	48	T=0.95800000	C=0.04200000	0.080 +/-0.075	T/T=0.91700000 C/T=0.08300000 C/C=0.00000000	0.083	2.16	IIPGA-WEISS-MARTINEZ
E-0 - NORTH AMERICA	40	T=0.82499999	C=0.17500000	0.289 +/-0.110	T/T=0.64999998 C/T=0.34999999 C/C=0.00000000	0.350	2.16	IIPGA-WEISS-MARTINEZ

dbSNP summary of Genotypes for ss15355860

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
D-0 - NORTH AMERICA	48	48	T=0.95833331	C=0.04166667	T/T=0.91666669 C/T=0.08333334	Pr(chiSq=0.004,df=1) =1.000	Genotype Freq.
E-0 - NORTH AMERICA	40	40	T=0.82499999	C=0.17500000	T/T=0.64999998 C/T=0.34999999	Pr(chiSq=0.287,df=1) =0.655	Genotype Freq.

Submitted individual genotype for ss15355860

There is no individual genotype data for ss15355860.

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