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Submitted SNP(ss) Details: ss16341796           
Submitter
HandleEGP_SNPS
Submitter SNP IDMYBPC3-001219
RefSNP(rs#)rs2856661
Submitted Batch IDMYBPC3-PDR90-010904
Submitted DateJan 09, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPJan 9 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize142
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss16341796|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 GATGGGGTTT CATCATGTTG CCCAGGCTGG TCTCGAACTC CTGAGCTCAA GTGATCTGCC
 CGCCTCAGCC TCCCAAAGTG CTGGGATTAC AGGTGTGAGC CACTTCGCCC AGCCCATTTT
 TATTTTTTTA TTATTATTCT TTGAGATATT AATAATAAAA AATAATAATA AATAATATTT
 TTATTATTAT TATCACTCTG TCACCCAGGC TGCAGTGCAG TGGTGCGATT TTGGCTCACT
 GCAGCCCGGA ACTCC
 Y
 TGGACTCAAG CGATCCTCCC ACCTCAGCCT CCTGGGTAGC TGATACTACA GGTCCACACC
 ACCACACCTG GCTAATTTGT GTGTGTGTGT GTATTTATTT TATTTTTTAT TTTTTTAGTA
 GAGATGGGGT TTTGCCATGT TGCCCAGGCT GGTCTCAAAC TCCTGGCCTC AAATAATCTG
 CCTGCCTCGG CCTCCCAAAG TGCTGGGATT ACAGATGAGC CACCACACCC GGCCTAACAT
 TTTTAAAATT ATAAA

  Submitted Frequency for ss16341796 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90142C=0.69718301
T=0.30281699
0.422 +/-0.043MYBPC3-PDR90-010904EGP_SNPS


  dbSNP summary of Genotypes for ss16341796 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90142142C=0.69718307
T=0.30281690C/C=0.49295774
C/T=0.40845069
T/T=0.09859155
Pr(chiSq=0.076,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss16341796 back to top
There is no individual genotype data for ss16341796.

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