NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss16341807           
Submitter
HandleEGP_SNPS
Submitter SNP IDMYBPC3-003467
RefSNP(rs#)rs3729985
Submitted Batch IDMYBPC3-PDR90-010904
Submitted DateJan 09, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPJan 9 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize174
PopulationPDR90
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginG:Germline C:Germline
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss16341807|allelePos=256|len=511|taxid=9606|alleles='C/G'|mol=Genomic
 TGCCGTGTTC GAGGCCGAGA CAGAGCGGGC AGGAGTGAAG GTGCGCTGGC AGCGCGGAGG
 CAGTGACATC AGCGCCAGCA ACAAGTACGG CCTGGCCACA GAGGGCACAC GGCATACGCT
 GACAGTGCGG GAAGTGGGCC CTGCCGACCA GGGATCTTAC GCAGTCATTG CTGGCTCCTC
 CAAGGTCAAG TTCGACCTCA AGGTCATAGA GGCAGGTAAG ATCCTGATCA GCCTTCCCTG
 AGGTTTGGGC TGCTG
 S
 GGGAGGGGCA GCCCAGCGAC TCTCCATCCA TCCAGGGAAC AGGAGGTGCT TTCACACTTT
 CTTGCCTTTG CTGTGGCTGT GCCCCCCGCC AGGAACGCCC TTTCCCCCTT TTCTGCACAT
 GACCTCTCTG AGTACCCCCA TGTGCCATCC TGGCTTGTTC CAGCCATGGG GTAGGTGGGA
 GAGATGAACA AGACACAACC CCACTCTCCC CCTGCAGACC TCCCTGGGGA GATGACCCTG
 CACAGACGGC CGGGA

  Submitted Frequency for ss16341807 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90174G=0.96551698
C=0.03448300
0.067 +/-0.036MYBPC3-PDR90-010904EGP_SNPS


  dbSNP summary of Genotypes for ss16341807 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90174174G=0.96551722
C=0.03448276G/G=0.94252872
C/G=0.04597701
C/C=0.01149425
Pr(chiSq=8.335,df=1)
=0.005		Genotype
Freq.

  Submitted individual genotype for ss16341807 back to top
There is no individual genotype data for ss16341807.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement