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Submitted SNP(ss) Details: ss16361197           
Submitter
HandleEGP_SNPS
Submitter SNP IDSTAT2-000806
RefSNP(rs#)rs4301822
Submitted Batch IDSTAT2-PDR90-012704
Submitted DateFeb 09, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPFeb 9 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize178
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss16361197|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 TGATGACCAT GGCTGGGATG TCAGGGGGGC CTATGGGTCT AGCGATCAGT GCTGCACTTA
 AACCTGCATT AAGGTCTGGG GTTCAGCAGT TGATCCAGTA TTACCAAGAT CAGAAAGACG
 CAAACATCTC TCAGCCGGAG ACCACCAAGG AGGGTTTGAG GGCCATCTCA GATGTGAGTG
 ACTTGGAAGA AACAACTACT CTGGCTTCTT TCATATCAGA AGTAGTAAGT TCAGCTCCCT
 ACTGGGGGTG GGCCA
 Y
 AATCAAGAGC TATGACTTAG ATCCTGGGGC TGGGAGTCTT GAGATATAAA AGAATGTGGT
 AACCACAGAA TTAATAACTG TACTACCCTG ACAAGCTATA TACATGTCTT CAAAATTTTA
 ATCTGATTTA TCCAGGAGGA AGGCTGTACA GTAAAACGTA AGAACGTAAA TGTTTGGGTG
 TTGAAGTCAC AGGGTTTGGT TTCGAATCTA GGCTCCACTT GTTAGAGCCT CGGTGATCAC
 TGAATAGTAA CTTCT

  Submitted Frequency for ss16361197 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90178T=0.86516899
C=0.13483100
0.233 +/-0.053STAT2-PDR90-012704EGP_SNPS


  dbSNP summary of Genotypes for ss16361197 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90178178T=0.86516851
C=0.13483146T/T=0.79775280
C/T=0.13483146
C/C=0.06741573
Pr(chiSq=15.855,df=1)
=0.001		Genotype
Freq.

  Submitted individual genotype for ss16361197 back to top
There is no individual genotype data for ss16361197.

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