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Submitted SNP(ss) Details: ss16361199           
Submitter
HandleEGP_SNPS
Submitter SNP IDSTAT2-001008
RefSNP(rs#)rs11575220
Submitted Batch IDSTAT2-PDR90-012704
Submitted DateFeb 09, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPFeb 9 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize180
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss16361199|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 GGCTTCTTTC ATATCAGAAG TAGTAAGTTC AGCTCCCTAC TGGGGGTGGG CCATAATCAA
 GAGCTATGAC TTAGATCCTG GGGCTGGGAG TCTTGAGATA TAAAAGAATG TGGTAACCAC
 AGAATTAATA ACTGTACTAC CCTGACAAGC TATATACATG TCTTCAAAAT TTTAATCTGA
 TTTATCCAGG AGGAAGGCTG TACAGTAAAA CGTAAGAACG TAAATGTTTG GGTGTTGAAG
 TCACAGGGTT TGGTT
 Y
 CGAATCTAGG CTCCACTTGT TAGAGCCTCG GTGATCACTG AATAGTAACT TCTTTCTTGA
 ACTAAGATCA GTTTTGAAGT TTCTAAAGGA GATAGAATGA TTTTAACCTC AATGAGTTGC
 CCTGTAAATT TAAAATGATA CAATGAATCT AAAATGCTTA TCACAGTACT TTCAATAAAT
 AGCTATTAGC CAGGTGCGGT GGCTCACGCC TGTAATCCCA GCACTGTGAG AGGCTGAGGC
 GGGATGATCA CCTGA

  Submitted Frequency for ss16361199 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90180T=0.99444401
C=0.00555600
0.011 +/-0.015STAT2-PDR90-012704EGP_SNPS


  dbSNP summary of Genotypes for ss16361199 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90180180T=0.99444443
C=0.00555556T/T=0.98888886
C/T=0.01111111
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss16361199 back to top
There is no individual genotype data for ss16361199.

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