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Submitted SNP(ss) Details: ss16361202           
Submitter
HandleEGP_SNPS
Submitter SNP IDSTAT2-001870
RefSNP(rs#)rs11575222
Submitted Batch IDSTAT2-PDR90-012704
Submitted DateFeb 09, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPFeb 9 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize178
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss16361202|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 GGGGCTCACG CGCGGGTTCT CGAAAATCAG CTGTTTCAGT CTTGGGCTAG TCCACTAATT
 GGACTCCTCC CCTCGTAGAA AGTGCCTACT TGAACTTCTC CACCAATCGC TGAAGCTGCA
 GGTGTGGTTT CGGCTCAGCT TGTCCCGCCC TGCGGAGGGG CGGAGTTGCG GCGGCGCCAG
 TGAGCTCGCA GTCTGGGAAG GGCTTGACTG AATGGCAGCC AGTGTCGGGG TGGCGGCTGG
 GAATGGGGGC CGCTC
 Y
 GGACTTCCGC TGCCAACTAC AAGGGGGCGG GTCCGAGGGG GGTTAGCCGA AGTTGTAGGC
 GGGGCGCGAG GTTCTAGTAC CCGAGCTCAT ACTAGGGACG GGAAGTCGCG ACCAGAGCCA
 TTGGAGGGCG CGGGGACTGC AACCCTAATC AGGTACGGGC CCTGAGAGGG TGTGCTGGGG
 TAGGGGTGGG GGTGAGAGTG AGAGTTCCTC CGAGGGAAGG GCGACTGGCC CCAGGGGTTA
 CCCCCTGGAG AGGGT

  Submitted Frequency for ss16361202 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90178C=0.98876399
T=0.01123600
0.022 +/-0.022STAT2-PDR90-012704EGP_SNPS


  dbSNP summary of Genotypes for ss16361202 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90178178C=0.98876405
T=0.01123596C/C=0.97752810
C/T=0.02247191
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss16361202 back to top
There is no individual genotype data for ss16361202.

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