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Submitted SNP(ss) Details: ss16361209           
Submitter
HandleEGP_SNPS
Submitter SNP IDSTAT2-003970
RefSNP(rs#)rs11575227
Submitted Batch IDSTAT2-PDR90-012704
Submitted DateFeb 09, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPFeb 9 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize180
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss16361209|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 GCTGAGGCAG GAGAATCCCT TCAACTCGGG AGGCAGAGTT TGCAGTGAGC CGAGATCGTG
 TCACTGCACT CCAGCCTGGG TGACAGAGCA AGACTCCATC TCAAAAAAAG AAAAAAAAAA
 AAAGAAAAAA AAAAGCTTCA GAGCCAGCAG GGATCATGCT GTAATAAATA CTTAACATCA
 ACACTGATCT TTAAATGCTT TAGCACAATC AAATATAAAT AACAAACACA CACATAAATG
 CAAAATAAAT GAATT
 R
 GGGAGATAGA TGAAATAAGA TTGTGGAAAT AGTAATGTTT GTTAAAGCTG GATGGTGATC
 CTTGTACTAT TCACTCTACT CTAGTGTGTA TTTGAAAATT ACCATTAGGC TGGTTATGGT
 GGCTCATGCC TGTTAATCCC GGCATTTTGG AAGGCTGAGG CAGGCGGATT ACTTGAGCTC
 AGGAGTTTGA GATCTGCCTG GGCAACATGG CAAAATCCCA TCTCTACAAA AAATTAGCTG
 GCATGATGGC ACACT

  Submitted Frequency for ss16361209 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90180A=0.99444401
G=0.00555600
0.011 +/-0.015STAT2-PDR90-012704EGP_SNPS


  dbSNP summary of Genotypes for ss16361209 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90180180A=0.99444443
G=0.00555556A/A=0.98888886
A/G=0.01111111
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss16361209 back to top
There is no individual genotype data for ss16361209.

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