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Submitted SNP(ss) Details: ss16361211           
Submitter
HandleEGP_SNPS
Submitter SNP IDSTAT2-004049
RefSNP(rs#)rs11575228
Submitted Batch IDSTAT2-PDR90-012704
Submitted DateFeb 09, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPFeb 9 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize180
PopulationPDR90
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss16361211|allelePos=256|len=511|taxid=9606|alleles='C/G'|mol=Genomic
 GTGACAGAGC AAGACTCCAT CTCAAAAAAA GAAAAAAAAA AAAAGAAAAA AAAAAGCTTC
 AGAGCCAGCA GGGATCATGC TGTAATAAAT ACTTAACATC AACACTGATC TTTAAATGCT
 TTAGCACAAT CAAATATAAA TAACAAACAC ACACATAAAT GCAAAATAAA TGAATTAGGG
 AGATAGATGA AATAAGATTG TGGAAATAGT AATGTTTGTT AAAGCTGGAT GGTGATCCTT
 GTACTATTCA CTCTA
 S
 TCTAGTGTGT ATTTGAAAAT TACCATTAGG CTGGTTATGG TGGCTCATGC CTGTTAATCC
 CGGCATTTTG GAAGGCTGAG GCAGGCGGAT TACTTGAGCT CAGGAGTTTG AGATCTGCCT
 GGGCAACATG GCAAAATCCC ATCTCTACAA AAAATTAGCT GGCATGATGG CACACTCCTG
 TAGTCCCAGC TCCTTGAGGG GCTGAGGCAG AGAATGGCTT GAACCTGAGA GGTCAAAGCT
 GCAGTGAGCC AAGAT

  Submitted Frequency for ss16361211 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90180C=0.99444401
G=0.00555600
0.011 +/-0.015STAT2-PDR90-012704EGP_SNPS


  dbSNP summary of Genotypes for ss16361211 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90180180C=0.99444443
G=0.00555556C/C=0.98888886
C/G=0.01111111
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss16361211 back to top
There is no individual genotype data for ss16361211.

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