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Submitted SNP(ss) Details: ss16361216           
Submitter
HandleEGP_SNPS
Submitter SNP IDSTAT2-011419
RefSNP(rs#)rs11575231
Submitted Batch IDSTAT2-PDR90-012704
Submitted DateFeb 09, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPFeb 9 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize176
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss16361216|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 TTTCCCCTAT CCCCCTTCCT TCCCCCAGGC TGCTGGTGAG ACTCCAGGAA GGCAATGAGT
 CACTGACTGT GGAAGTCTCC ATTGACAGGT AAATTGGAGC AGGTGAAGGG TGGCCAGGAC
 ACGGGCTGCT GGGGTGGAGG AGATACTCAC TCTTCACAAC AGGGCCCTAG GGCTATCTCC
 TTCCTCCTTC CAATCCTACC TCACAGAAAT TATAATTCAT TTCTTTTGTT GAACACTTAC
 TTTGTGACAT GCAGC
 R
 TGTCAGCTAC TCATTTAATT GTCACACCAA CCCCATGAAT AAACTATTAC CAGTGCACTG
 TACAAACAAA GATACAGGCT TAGAGAGACT GATTACATCT CTTCTCAAGG CCACATAGCT
 AGTGAGCTCA AGTCGGGTTT GAACCGAGGT CTGTCTGATC CCAAAGACGA AACTCCTAAC
 TTCCATACTC TTTTGCCCAA TGATTTTTTT AAATTTATTT CTTTTCAGGA ATCCTCCTCA
 ATTACAAGGG TAGGT

  Submitted Frequency for ss16361216 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90176A=0.93181801
G=0.06818200
0.127 +/-0.046STAT2-PDR90-012704EGP_SNPS


  dbSNP summary of Genotypes for ss16361216 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90176176A=0.93181819
G=0.06818182A/A=0.86363637
A/G=0.13636364
Pr(chiSq=0.062,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss16361216 back to top
There is no individual genotype data for ss16361216.

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