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Submitted SNP(ss) Details: ss16361220           
Submitter
HandleEGP_SNPS
Submitter SNP IDSTAT2-011629
RefSNP(rs#)rs11575235
Submitted Batch IDSTAT2-PDR90-012704
Submitted DateFeb 09, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPFeb 9 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize154
PopulationPDR90
Allele
Observed AlleleA/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss16361220|allelePos=256|len=511|taxid=9606|alleles='A/T'|mol=Genomic
 TATAATTCAT TTCTTTTGTT GAACACTTAC TTTGTGACAT GCAGCATGTC AGCTACTCAT
 TTAATTGTCA CACCAACCCC ATGAATAAAC TATTACCAGT GCACTGTACA AACAAAGATA
 CAGGCTTAGA GAGACTGATT ACATCTCTTC TCAAGGCCAC ATAGCTAGTG AGCTCAAGTC
 GGGTTTGAAC CGAGGTCTGT CTGATCCCAA AGACGAAACT CCTAACTTCC ATACTCTTTT
 GCCCAATGAT TTTTT
 W
 AAATTTATTT CTTTTCAGGA ATCCTCCTCA ATTACAAGGG TAGGTGCTTG ACAAGGACAC
 TGCAAACATC TGTACAGTGT ATGACCTGCA GAACCACATT CGGCAGCCCT GGTGGCACAA
 ACAAGGAAGA GGGGGATTTG GGATATGGAC AAAGGGAGAT GGCGAGATCT GAAATGAAGT
 GGAACTTCTG TTTTTTTTTT TCTGCTGAGT TTTTAGAATA ATTCCATTCC TTGTCTCCAT
 GTATCTTCCT CCTGG

  Submitted Frequency for ss16361220 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90154T=0.99350601
A=0.00649400
0.013 +/-0.018STAT2-PDR90-012704EGP_SNPS


  dbSNP summary of Genotypes for ss16361220 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90154154T=0.99350649
A=0.00649351T/T=0.98701298
A/T=0.01298701
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss16361220 back to top
There is no individual genotype data for ss16361220.

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