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Submitted SNP(ss) Details: ss2283160           
Submitter
HandleTSC-CSHL
Submitter SNP IDTSC0376884
RefSNP(rs#)rs1463148
Submitted Batch ID001018_12b
Submitted DateOct 20, 2000
Publication CitedN.D.
First entry to dbSNPOct 20 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTSC-WUGSC-1-2
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss2283160|allelePos=376|len=669|taxid=9606|alleles='C/T'|mol=Genomic
 TTGTTTTATA TTTTACTATG TAGACAAAAG CCCTGGGTTT CTGACTTTGA AATGCTAATA
 ACCGATGCTC ATTTATTTCA AAACAGGATG CAGTATGTTC TTATGTAGCA TCAGGCTCAC
 TAAATATTAC TTTGCTGTGA TTATTAGGGA TCCATTGCAT TATGGAATTA TTTTCTAGGC
 TTTACTTAAA ATATTCAATA GATTTAGATG TTCGGTAAAA TTTTATTTAA GTTTATACTT
 ACGTATCAGA AAAGAATGAA GTTTCCTTTT ACAGAAACTA CATTGATACC AAACTTTACC
 ATTTTCCTGG AAAAACCAGT TTTCCATAAC TTTGGCTTTT CCTTTTTGAT TGAAAAAATC
 TTTCATGTAG GTGGG
 Y
 TCATAAGGTC AAAATTTAGA TCACTCTAAT TAATTAAATT TCAGAGAATA TAACCATTGT
 TAAGAAAAGA AATAGAGCCA GGAATATTTT CAGACATTGA GAATAAATGC TGGTAAATTT
 TGTTTTATTT TTCTTAGTCT GGCAATCCAT ACTGTCTAAA ATGTTGACTA TACGAGAAAA
 TACAAGTCGT AGTTCATTTG GAGGAAAGTC GTATCATCAT TTCTTAGGAA GTCTGAGAAC
 TTCCTCGGCT TTCACTTGAT AATATGTCAT TTTTTTCTCT TGGTGGGAGG TAG

  Submitted Frequency for ss2283160 back to top
There is no frequency submission for ss2283160.


  dbSNP summary of Genotypes for ss2283160 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU110110C=0.54545456
T=0.45454547C/T=0.50909090
C/C=0.29090908
T/T=0.20000000
Pr(chiSq=0.039,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
8484C=0.78571427
T=0.21428572C/C=0.61904764
C/T=0.33333334
T/T=0.04761905
Pr(chiSq=0.004,df=1)
=1.000
Genotype
Freq.
HapMap-JPT8686C=0.75581396
T=0.24418604C/C=0.58139533
C/T=0.34883720
T/T=0.06976745
Pr(chiSq=0.130,df=1)
=0.752
Genotype
Freq.
HapMap-YRI116116C=0.74137932
T=0.25862068C/C=0.56896549
C/T=0.34482759
T/T=0.08620690
Pr(chiSq=0.589,df=1)
=0.479
Genotype
Freq.

  Submitted individual genotype for ss2283160 back to top
There is no individual genotype data for ss2283160.

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