NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss23141828           
Submitter
HandleEGP_SNPS
Submitter SNP IDFGF10-004966
RefSNP(rs#)rs17233959
Submitted Batch IDFGF10-PDR90-042604
Submitted DateApr 26, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPApr 26 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize176
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23141828|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 CTAAATATTG TCAAACCATA AATAATTTAG GCTTTCCAAG AACATCTGTG TCAAAACATA
 GCAAGTGAAA ATTAGAGATT GAAAAAGCCT TAATTTCACA TGTGGCCAGG TAATCTAAAT
 GCTGCTACGA TTTCCAGCTG GACTGATTCA GCTGAACTAC ATGGTATCAT TAAGATATTG
 TCTAAACGTT GCATAATAAC ATGTGAACAA ACTTTTACCA TGCCTACAGG GTAGCCAGCC
 AGCTGTCCAC CAAAT
 R
 GTAGCTTGTT AAATACTAGG ATCTCTAACC TCTGAAGAGT GTCAATTCCT TTTCCAAAAA
 CCACATTTCA GTAACATTTT CCTAAACAAG TTATTAATTA TTCTCAATAC ACAAAGCTGT
 TCTTTTGAGG TTTGCTTATT TGAAGATTAA TTTTCTTTGT TACTTTTGAC CCTAGTATTA
 TTGCTGCTAA AATACAGTAA CAGCTTATCT AAGAGGTTAT ATGTTTTTGT TGTCCTGGGT
 AATTAAACAA CTGTT

  Submitted Frequency for ss23141828 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90176G=0.99431801
A=0.00568200
0.011 +/-0.016FGF10-PDR90-042604EGP_SNPS


  dbSNP summary of Genotypes for ss23141828 back to top
No sufficient data to compute Hardy-weinberg probability for ss23141828.


  Submitted individual genotype for ss23141828 back to top
There is no individual genotype data for ss23141828.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement