Submitted SNP(ss) Details: ss24235117

Submitted SNP(ss) Details: ss24235117

Submitter
Handle	PERLEGEN
Submitter SNP ID	afd0555981
RefSNP(rs#)	rs17348469
Submitted Batch ID	AFD_EUR_18-MAY-2004
Submitted Date	Aug 21, 2004
Publication Cited	N.D.
First entry to dbSNP	Aug 10 2004 12:00:00:000AM

Resource Links
GenBank Accession	NC_000001.5
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	AFD_CHIP_HYB
Ascertainment Samplesize	48
Population	AFD_EUR_PANEL

Allele
Observed Allele	C/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TTGTTGCAAG ATGGAAGATG TACAGAAGGC AGGTGCAGAG GCTTCCTGCT AAGGCCTGTG
 GCTGTCAGAA GAGCAGTTGG TGGCCAGG
 AGAGCAGCAT AC
 S
 TCAAGGAGGG TG
 AGGCAACTGG ATGGTTAGGG AGATGGAATG ACTAGAAGCA GCTGCAATGA GAAAAAGGGC
 TTAAGGGGAA TTTTAGGCAG TTTTCCTA

Submitted Frequency for ss24235117

There is no frequency submission for ss24235117.

dbSNP summary of Genotypes for ss24235117

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
AFD_EUR_PANEL - NORTH AMERICA	48	48	C=0.87500000	G=0.12500000	C/C=0.79166669 C/G=0.16666667 G/G=0.04166667	Pr(chiSq=1.361,df=1) =0.251	Genotype Freq.
AFD_AFR_PANEL - NORTH AMERICA	44	44	C=0.97727275	G=0.02272727	C/C=0.95454544 C/G=0.04545455	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
AFD_CHN_PANEL - NORTH AMERICA	48	48	C=0.97916669	G=0.02083333	C/C=0.95833331 C/G=0.04166667	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss24235117

There is no individual genotype data for ss24235117.

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