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Submitted SNP(ss) Details: ss24735073           
Submitter
HandleEGP_SNPS
Submitter SNP IDLIPF-005489
RefSNP(rs#)rs17287028
Submitted Batch IDLIPF-PDR90-052104
Submitted DateMay 24, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPMay 24 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize166
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss24735073|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 TTTGCAGCAT GGTTTGCTTG CATCAGCCAC AAACTGGATT TCCAACCTGC CGAACAACAG
 CCTTGCCTTC ATTCTGGCAG ATGCTGGTTA TGATGTGTGG CTGGGCAACA GCAGAGGAAA
 CACCTGGGCC AGAAGAAACT TGTACTATTC ACCAGATTCA GTTGAATTCT GGGCTTTCAG
 GTAAACAAAA GGGACAATTA AAAATAAACA CTGGGCTTTA AAAGCATAGG CATTTGCCCC
 TTCTAATCCA GTCCC
 R
 TTTTAACAAA TTACACTCCA AGTAGGAGGA TAAACAAGTC ATTTTCATTC TAATCCATTC
 TTGGATTCTT CCATGTACCT CATTCCTAGG GTAGCTTTTC CTTCAAACTT TTGTGATCTC
 AGGAGTCTCC ATTAGGGATT TCCAGAAAGT GATTTTCCAA ATGGAATGAA CAATATGGCT
 GAAGCAAGGA AACTCACAGC CCCTGGAAAA TTCCAAAGGA ATGTCCATAT GGATTCAAGA
 GAGAAGTAAA AACCC

  Submitted Frequency for ss24735073 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90166A=0.99397600
G=0.00602400
0.012 +/-0.017LIPF-PDR90-052104EGP_SNPS


  dbSNP summary of Genotypes for ss24735073 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90166166A=0.99397588
G=0.00602410A/A=0.98795182
A/G=0.01204819
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss24735073 back to top
There is no individual genotype data for ss24735073.

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