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Submitted SNP(ss) Details: ss28526731           
Submitter
HandlePGA-UW-FHCRC
Submitter SNP IDHMOX1-001668
RefSNP(rs#)rs9619536
Submitted Batch IDHMOX1-AFRICAN-092904
Submitted DateNov 05, 2004
Publication Cited[1] SeattleSNPs. NHLBI Program for Genomic Applications HL66682
First entry to dbSNPNov 5 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize44
PopulationPGA-AFRICAN-PANEL
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 2
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss28526731|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 TCCCTGTGCG GCTCCACCTC CACCTTCCCT TAAAGTCGGC CTTTCACCTC CAGGGCCATT
 CCTTCTTGCT AATGATTTAC TGTCTTTCAA AAGAATTGTC TGCATTCCCT ATCTCCCTTC
 TCCCCTATAA AAAAGGCTGG GTAGCCTCTG TACTCCACTG GGTTACAGGG TCACCATTCT
 TCCGTGATTA CCCCATTACA ATACATTTTT GTATGTCTTT TCTCCTCTTA ACCTGACTTT
 TGTCGGTTGG TTTTC
 R
 GGGAACCTTC AGAGGAAGAA GGGGAATTTT TTTCAAGGCC CCTTAGCTCA CCCTTGGGAG
 GATGATCCTT TCCAATACAA TCTCAGAAGT GCCTCTGGGC TGTAGTGGCC CTAGGCTGAA
 TTCCAGGAAG TTTTTTTTTT TTTTTTTTGT TTTTTTTTTT TTTTGAGGGA CAGCGTCTTG
 TTCTGTTGCC CAGGTTAGAA TACAGTAGCG TGGTCACAGC TCACTCCAGC CTCTACATCC
 CAGGCTCAAG TGAAC

  Submitted Frequency for ss28526731 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PGA-AFRICAN-PANEL44G=0.54545498
A=0.45454499
HMOX1-AFRICAN-092904PGA-UW-FHCRC
PGA-EUROPEAN-PANEL44G=0.97727299
A=0.02272700
HMOX1-EUROPEAN-092904PGA-UW-FHCRC


  dbSNP summary of Genotypes for ss28526731 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PGA-AFRICAN-PANEL4444G=0.54545456
A=0.45454547G/G=0.40909091
A/A=0.31818181
A/G=0.27272728
Pr(chiSq=4.455,df=1)
=0.050		Genotype
Freq.
PGA-EUROPEAN-PANEL4444G=0.97727275
A=0.02272727G/G=0.95454544
A/G=0.04545455
Pr(chiSq=0.001,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss28526731 back to top
There is no individual genotype data for ss28526731.

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