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Submitted SNP(ss) Details: ss28527039           
Submitter
HandlePGA-UW-FHCRC
Submitter SNP IDTRPV6-018438
RefSNP(rs#)rs4987645
Submitted Batch IDTRPV6-AFRICAN-092904
Submitted DateNov 06, 2004
Publication Cited[1] SeattleSNPs. NHLBI Program for Genomic Applications HL66682
First entry to dbSNPNov 6 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize48
PopulationPGA-AFRICAN-PANEL
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 2
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss28527039|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 TGGAAACTGA GACCCCTGAG CTTGTCTCTG ATTTATCGCC ACCGGTTTTT GCATGCAAGG
 ACCACTTAAG CAATGCTTCT CCAACTTTCA TATGCCCAGG AATCAGCTGG AAATCTTCTT
 AAACTGCAGA TTTGGATTCA CTAGGTGGAA GGGTCCGCCA GAGCATTTCC ATTTCTTATA
 AGGGCTCATG TGCTGCTGCT GATCCAGGGG TCCACTTTAA GAAGGAAGGC TGTTGAGATG
 ATGTGAGAAG AAAGA
 Y
 GAGAGGCAGA AAGGAAGAGA CAGAGATAAT GAATGAATGA ATGAATGAAT GAATGAATGA
 ACACCTATGA GGAAGGAAGG CCTGGAGCCA GGCTTGTTCT TATGGTCCAC TGTTCTTTTG
 TGTTAAGCCC TGAAGATGCT ATTGTTGGGA GGGAAGCGCC AGGATCAAAG GGTTCTGCTG
 AGAAGGTTGA GTAGGCAGAG GATGGTGCAA CAGGAGAAAT CCTGCTAGCC TGTGCATATG
 ACTCCCTCCA CAAAT

  Submitted Frequency for ss28527039 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PGA-EUROPEAN-PANEL46C=0.97826099
T=0.02173900
TRPV6-EUROPEAN-092904PGA-UW-FHCRC
PGA-AFRICAN-PANEL48C=0.97916698
T=0.02083300
TRPV6-AFRICAN-092904PGA-UW-FHCRC


  dbSNP summary of Genotypes for ss28527039 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PGA-AFRICAN-PANEL4848C=0.97916669
T=0.02083333C/C=0.95833331
C/T=0.04166667
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.
PGA-EUROPEAN-PANEL4646C=0.97826087
T=0.02173913C/C=0.95652175
C/T=0.04347826
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss28527039 back to top
There is no individual genotype data for ss28527039.

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