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Submitted SNP(ss) Details: ss2982088           
Submitter
HandlePGA-UW-FHCRC
Submitter SNP IDPROCR-004054
RefSNP(rs#)rs2069948
Submitted Batch IDPROCR-AFRICAN-043001
Submitted DateMay 18, 2001
Publication Cited[1] SeattleSNPs. NHLBI Program for Genomic Applications
First entry to dbSNPMay 18 2001 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodMETHOD-D
Ascertainment Samplesize42
PopulationPGA-AFRICAN-PANEL
Allele
Observed AlleleC/T
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 2
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss2982088|allelePos=51|len=101|taxid=9606|alleles='C/T'|mol=Genomic
 TATTATCTTC CGCTGCCCGC CGCCCCCTCC CACGCCGGCC CAGGCTGAAG
 Y
 TGACTCTGCC CGCAGGCCTC CAAAGACTTC ATATGCTCCA GATCTCCTAC

  Submitted Frequency for ss2982088 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PGA-AFRICAN-PANEL42T=0.83333302
C=0.16666700
0.278 +/-0.108PROCR-AFRICAN-043001PGA-UW-FHCRC
PGA-EUROPEAN-PANEL44T=0.63636398
C=0.36363599
0.463 +/-0.056PROCR-EUROPEAN-043001PGA-UW-FHCRC


  dbSNP summary of Genotypes for ss2982088 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PGA-AFRICAN-PANEL4242T=0.83333331
C=0.16666667T/T=0.66666669
C/T=0.33333334
Pr(chiSq=0.257,df=1)
=0.655		Genotype
Freq.
PGA-EUROPEAN-PANEL4444T=0.63636363
C=0.36363637C/T=0.45454547
T/T=0.40909091
C/C=0.13636364
Pr(chiSq=0.007,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss2982088 back to top
There is no individual genotype data for ss2982088.

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